Maize bushy stunt phytoplasma: MBSPM3_v1c1200
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Entry
MBSPM3_v1c1200 CDS
T04456
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mbp
Maize bushy stunt phytoplasma
Brite
KEGG Orthology (KO) [BR:
mbp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MBSPM3_v1c1200 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbp03021
]
MBSPM3_v1c1200 (rpoD)
Transcription machinery [BR:
mbp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MBSPM3_v1c1200 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AOF54654
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Position
complement(127123..128520)
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AA seq
465 aa
AA seq
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MEFDNIIKTLNEQAGSEQKLTSQLIMSFLQNQNIKIPYQQIAQKLKEQGIQIISCETQAA
PSLNENPNQNDTHPQTNTTNDDFTDLDSELTNANLENTDDNKDEGNTQDSEEDIQDFDIS
EEDLISDEKLIELEEDEDEKISKEEISKIHSDIKMDDSVRMYLKEIGQIPLLSLAEEQKK
SILVFLGKQAKQKLAKHKTKEIELSEEQLQEAHDQIEQARRAKDILVESNYRLVVSIAKR
YIGRGILFLDLIQEGNMGLMRAVDKFDYQKGFKFSTYATWWIRQAITRAIADQARTIRIP
VHIVETINKMALCTRKLTQKLKKKPTVEELADKMNISAEKIRSIQYIEKKPISLEAPARE
NEEDETSLGDFISDPNILSPHEYMMKEVTQRLLDEVLENTLTDREEKVLKMRYGLLDGKT
HTLEEVGNLFGVTRERIRQIESKALRRLRTPAKQSKLKSLYHNHK
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggaattcgataacataatcaaaactttaaatgagcaagctggaagcgaacaaaaacta
acatctcaattaattatgtcttttttgcaaaatcaaaacataaaaataccatatcaacaa
atagcacaaaaactaaaagaacaagggattcaaattatttcttgcgaaacacaagcagct
ccatctctaaatgaaaaccccaatcaaaatgatacgcacccccaaacaaacaccaccaat
gatgattttactgaccttgattccgaattaacaaatgcaaacttagaaaacacagatgac
aacaaagatgaaggcaacacacaagactcagaagaagacatccaagattttgacatttct
gaagaggacttaatatcagatgaaaaactcatagaattagaagaagacgaagatgaaaaa
atttctaaagaagaaatttctaaaatccattctgatattaaaatggatgactcagttcgc
atgtatttaaaagaaattggtcaaatccctttgctttcgctagcagaagaacaaaaaaaa
tctattttagtttttttaggaaaacaagccaaacaaaagcttgccaagcacaaaaccaaa
gaaattgaattatccgaagaacaactccaagaagcacatgaccaaatcgaacaagcaagg
cgcgccaaagatattttggtagaatccaattatagattagtagtttccattgccaaacga
tatattggaagaggcattttgtttcttgatttaatccaagaaggcaacatgggcttaatg
cgtgcagtagataaattcgattatcaaaaaggatttaaattttctacctatgccacttgg
tggattagacaagccatcacaagagcgattgccgatcaagcaagaactatccgaattcct
gtccacatcgtagaaactattaataaaatggcactttgcactcgcaaattaactcaaaaa
cttaagaaaaaacctacagttgaagagttagccgacaaaatgaatatttctgctgaaaaa
attcgcagcatccaatatattgaaaaaaaacccatctctttggaagctcccgcaagagaa
aacgaagaagacgaaacttctttgggggattttatctcagatcccaacattttatccccc
cacgaatacatgatgaaagaagtaactcaaaggcttttagatgaagtcctagaaaatacc
ttaactgaccgcgaggaaaaagtattaaaaatgcgctatggtcttttagatggcaaaacc
cacactttagaagaagtaggcaatttatttggagttactagagaaagaatccgccaaatt
gaatccaaagctctaagacgactcagaactccagctaaacaaagcaaattaaaaagtttg
taccacaaccacaaataa
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