Maize bushy stunt phytoplasma: MBSPM3_v1c2410
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Entry
MBSPM3_v1c2410 CDS
T04456
Symbol
srmB
Name
(GenBank) superfamily II DNA/RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
mbp
Maize bushy stunt phytoplasma
Brite
KEGG Orthology (KO) [BR:
mbp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbp03019
]
MBSPM3_v1c2410 (srmB)
03009 Ribosome biogenesis [BR:
mbp03009
]
MBSPM3_v1c2410 (srmB)
Enzymes [BR:
mbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MBSPM3_v1c2410 (srmB)
Messenger RNA biogenesis [BR:
mbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MBSPM3_v1c2410 (srmB)
Ribosome biogenesis [BR:
mbp03009
]
Prokaryotic type
rRNA helicases
MBSPM3_v1c2410 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PhoH
DsrH
Motif
Other DBs
NCBI-ProteinID:
AOF54760
LinkDB
All DBs
Position
complement(260403..261782)
Genome browser
AA seq
459 aa
AA seq
DB search
MQNYIPKKILQLQFQTLTPIQKEVFSQFEKPGNLVGIAPTGTGKTHAYLLPILSKIDFQK
PFTQAIILVPTNDLVFQVWEMFKQIEKTNFTKILYGGMDKQKTIATFEKKQPPLIIATPD
KLLEYAFKLKKINLKYVSYLVLDEADMMFDEVFLTSLDPLINHLKAKILLFSATITEQLK
PFINRYFGKSTFIDVYKQSNLNRTFYLLETTTSRMQTLIHLTKVLNPYLALVFVNEKKEQ
ELVFQALQNDSLKLLNYNSALSVKQRKQSLKAIHKLKYQYVIASDLAARGIDFDASCVIH
YNLPSHLEFFFHRSGRTSRMGKKGEIIVLYDPQDIKQKDKINKLIQLGITFHQASLNKDG
FIRTQNYKTITTTKTDKPNKKNKNTKNIQKNQNNQTNQKNNYNQSSQSSQKQFFKQNKFT
KESKLPKKENNKDSTLETPNKTQNTVQETNNNKKLKANK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaactatattccaaaaaaaatattacaacttcaattccaaactttaactcccatc
caaaaagaagtcttttcacaatttgaaaaaccaggtaatctagtaggaattgctcctaca
ggaacaggcaaaacccatgcttatcttttgccgatattaagtaaaattgatttccaaaaa
ccatttactcaagcaattattttagtccctaccaatgatttagtatttcaagtatgggaa
atgtttaaacaaattgaaaaaactaattttaccaaaattctttacggaggaatggataaa
caaaaaacaattgctacttttgaaaaaaaacaacctccattaattattgcaactcccgat
aagttattagaatacgcgtttaaactcaaaaaaattaacttaaaatatgtatcttattta
gtccttgatgaagctgatatgatgtttgatgaggtatttttaacttccctagacccttta
attaatcatcttaaagccaaaattttattattttcagctaccattaccgaacaattaaaa
ccttttattaatcgttattttggtaaatctacttttattgatgtttataaacaaagtaat
cttaatcgtactttttatttattagaaacaactacaagcagaatgcagaccttaattcat
cttacaaaagtccttaatccttatttagcactcgtatttgtcaatgaaaaaaaagaacaa
gaattagtatttcaagctttacaaaatgacagtctcaaattgcttaattacaactctgct
ttatcagttaaacaaagaaaacaaagccttaaagctatccataaattaaaatatcagtac
gtaattgcatcagatcttgcagctagaggaattgattttgatgcttcttgtgttattcac
tacaacttaccttcacaccttgaattttttttccacagaagtggtagaacatcaagaatg
ggcaaaaaaggtgaaatcattgttttgtatgacccccaagacattaaacaaaaagacaaa
attaataaattaattcaattaggaattacttttcatcaagcctctttaaataaagatggt
tttataagaactcaaaattacaaaactattacaactaccaaaactgataagccaaataaa
aaaaataaaaataccaaaaacattcaaaaaaatcaaaacaatcaaactaaccaaaaaaac
aattacaaccaatctagccaatctagccaaaaacaatttttcaaacaaaacaaatttacc
aaagaatccaaacttcctaaaaaagaaaataataaagattctactttggaaacaccaaat
aaaactcaaaacacagtccaagaaacaaacaacaacaaaaaactaaaagcaaacaagtaa
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