Maize bushy stunt phytoplasma: MBSPM3_v1c3200
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Entry
MBSPM3_v1c3200 CDS
T04456
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mbp
Maize bushy stunt phytoplasma
Pathway
mbp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mbp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MBSPM3_v1c3200 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbp03021
]
MBSPM3_v1c3200 (rpoC)
03400 DNA repair and recombination proteins [BR:
mbp03400
]
MBSPM3_v1c3200 (rpoC)
Enzymes [BR:
mbp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MBSPM3_v1c3200 (rpoC)
Transcription machinery [BR:
mbp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MBSPM3_v1c3200 (rpoC)
DNA repair and recombination proteins [BR:
mbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MBSPM3_v1c3200 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Acyl-CoA_ox_N
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AOF54831
LinkDB
All DBs
Position
complement(350909..354970)
Genome browser
AA seq
1353 aa
AA seq
DB search
MSDNRLFTSVETLNLSSPVLEKLKLSGINTLEDFNTFTLEELRLLLQEAFLEVLPILKNF
ALPRNLQNLDLSEAVINILTELGMEDFQDLLQTKMAVLTKAFETNPLAFQKLNDLFKLYN
HFPSISSDKEYGSRDYDYFKIRLAAPEEIRQWSYGEVTSYETINYRTYKPEISGLFCQKI
FGPVVDFQCACSKKQVSIKSQFCNKCGVEFTETKVRRERMGHIELQTPIVHTWYLNSSPS
RLAILLNIKTKQLEEIVYYVSYVVIDPGKTEFKPKEIITETQYSEALYEFGNAFVALTGA
EAVKKLLENLNLEKTIKVLRKSLSENSKQKRESIIKRLEIIESFHQSDNKPEWMVMDVIP
VLPPGLRPMVPLDGGRFATTEVNDLYRRILNRNNRLKKQMLQKAPRLIIKNEKRMLQEAV
DALFDNAKTSKKNVNNVEKNRPLKSLSEMLRGKQGRFRQNLLGKRVDYSGRSVIIVGPDL
EMHQCGVPREMAIILFKPFILKKLQETKGIDKKNANTIYEKMNEEVWNALEEVVKEHPVL
LNRAPTLHRLGIQAFDPKLIDGKAIRLHPLVTPAFNADFDGDQMAIYVPLSLEAQAEARL
LMLVSNNILDPKNGNPVVTPSQDMVLGNYYLTIEEKKDRTINSYDAAQRTAEHQYKHRNE
GTFFADINEAKTAYQNKEIHLHTRIFIKPKAINLSFTEEQRQKYLMTTLGKLIFNDILPP
SFPYINEPTQFNLDVKTPDAYFLTPGTNPKQFLKKLPTPKPFNKKFLSMIIACFFKQMKI
TETSKMLDHIKKLGFKYSTIAGITVSFADINTYSNKQELLQEVEARNIQIDTWYNDGFLT
DAERRRLVINEWKTIRDKIQEGLMKEFQQDNHIFMMSESGARGSVSNFTQLAGMRGLMNN
PKGEIIEVPVKASFREGLKVSEFFISTHGARKGSTDTALKTAESGYLTRRLVDVTQDIVV
IKEDCNSDRGFVVEAMMSDGKEIVSLKQRIIGRFASYDICHPKTNALIIARNELITESKA
QEIITAKIKKVPIRSILTCNCEYGICAKDYGVNLATNKLVEIGEAVGVIAAQSIGEPGTQ
LTMRTFHTGGVASASDITQGLPRIEELFEVRKPKGKALISELKGKIKKIDKIRSQNPEIV
ITEENDPDTEHRYILEPNVDILVSKNNSVYPGQKLTSGSVDLKELLRVAGTTEVQKYILE
EVQKVYRAQNVYISDKHIEIIIHQMFKQILIIDEGDTQLLPGTEITINNFKKANLKMLEE
NKLLAVGRPIILGITRSSLRSDSLLSAASFQETTKILIDAAIKGKTDHLYGLKENVIIGG
LIPAGTGILETTLFKYPKEPATTSELAEKTNQN
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataacagattatttacttcagtagaaactttaaatctttcatctccagtttta
gaaaaattaaaactttctggaatcaatactttggaagattttaacacttttactttagaa
gagttaaggcttttactgcaagaagcttttttagaagttttacctatcctcaaaaacttc
gccctacctcgcaatttacaaaatctagatttgagtgaagccgttattaacattcttact
gaactaggaatggaagattttcaagatcttttacaaactaaaatggctgtccttacaaaa
gcatttgaaaccaatccccttgcttttcaaaaattaaacgacctatttaagttatacaac
cacttcccttctatttcatctgacaaagaatacggtagtagagattatgattattttaaa
atccgtctagctgctcctgaagaaatcagacagtggtcttatggtgaggttactagctac
gaaacaattaactatcgcacctataaaccagagatatcaggattattttgtcaaaagatt
tttggtccagtagttgatttccaatgtgcttgttctaaaaaacaagtcagcatcaaaagt
caattttgtaacaaatgtggagttgaatttaccgaaaccaaagtgcgtcgtgaaagaatg
ggacacatcgaattacaaacccccatcgtccacacttggtaccttaactcttctcccagc
cgtttagctattcttttaaacatcaaaactaaacaattagaagaaatagtttattatgtt
tcttatgttgtaattgatcctggaaaaaccgaattcaaacctaaagaaattattacagaa
actcaatacagtgaagctctttatgaatttggaaacgcttttgtagctttaacaggtgcc
gaagcggttaaaaaattactagaaaatctcaatttagaaaaaactatcaaagtccttcgc
aaatctttatcggaaaattccaaacaaaaaagagaaagcattattaaaagactagaaatc
atcgaatcttttcatcaatcagacaacaaacctgaatggatggtaatggatgttattcct
gtattacctccgggattaagaccgatggttcctttagatggtggtcgttttgccactact
gaagtcaacgatctttaccgccgcatccttaatcgcaacaatcgtttaaaaaaacaaatg
ctccaaaaagctcctcgtttaatcattaaaaatgaaaaaagaatgctacaagaagcagtt
gatgctttatttgataatgccaaaactagcaaaaaaaacgttaacaacgtcgaaaaaaat
cgcccgcttaaatctttatccgaaatgctacgcggtaaacaagggcgtttccgtcaaaat
cttttaggtaaaagagtggattattcgggacgatccgtaattattgtaggtcctgattta
gaaatgcaccaatgcggtgtgcctcgtgaaatggcaattattttgttcaaacctttcatt
ttgaaaaaactacaagaaaccaaaggaattgacaaaaaaaacgccaacaccatttatgaa
aaaatgaatgaagaagtttggaacgccttagaagaagtagtcaaagaacacccggtcctt
ttaaaccgcgccccaacactacaccgtttaggaattcaagcttttgatcctaaattaatt
gacggtaaagccattcgcctccaccctttagttacgcctgcctttaatgccgattttgat
ggcgaccagatggcaatttatgtccctctttctttagaagcccaagccgaagcgcgctta
ttgatgcttgtttcgaacaacattttagaccctaaaaatggtaatccagtagtaacacct
tcccaagatatggttttaggaaactactatttaaccattgaagaaaaaaaagatcgcact
ataaacagctatgatgctgcccaaagaactgcagaacaccaatacaaacatcgcaatgaa
ggaactttttttgctgacatcaacgaagccaaaaccgcttatcaaaataaagaaatccac
cttcacacaagaatttttatcaaaccaaaagcaattaatttatcatttactgaagaacaa
cgtcaaaaatatttaatgactactttaggaaaattaatttttaatgacattttgcctcca
agtttcccctacattaacgaaccaactcagtttaatttggatgtcaaaacccctgatgct
tattttttaactccaggaaccaaccccaaacaattcctaaaaaaacttcccacccctaaa
ccttttaacaaaaaatttctatctatgattattgcatgttttttcaaacaaatgaaaatt
acagaaacttccaaaatgctagatcacatcaaaaaattaggtttcaagtattctactatc
gcaggaattacagtttcatttgcagacatcaatacttactccaataaacaagaattgtta
caagaagtagaagcccgcaatattcaaattgatacttggtacaacgatggttttttaaca
gatgccgaacgtcgtcgtttagtaattaacgaatggaaaactattcgtgataaaattcaa
gaaggcttgatgaaagaatttcaacaagacaaccacatttttatgatgagcgaaagtggc
gcacgtggtagcgtttctaactttactcaattagcagggatgagagggttaatgaataac
cctaaaggtgaaattattgaagtccctgttaaagcttctttccgagaaggtctaaaagtt
tctgagtttttcatctctactcacggagcccgtaaaggttcaactgacactgccctaaaa
acagccgagtcaggttatctaacgcgtcgtttagttgacgtaactcaagatattgttgtt
atcaaagaagattgcaatagtgaccgcggttttgttgtagaagctatgatgagcgacggc
aaagaaattgtttccctcaaacaacgcattattggacgctttgctagttacgacatttgt
catccaaaaaccaacgcccttattatagcgcgcaatgaattaattactgagtccaaagcc
caagaaattattactgccaaaattaaaaaagttcctattagaagcattttaacttgtaat
tgtgaatatggtatttgcgccaaagactacggcgtcaatctagctaccaataaattagta
gaaattggcgaagctgttggtgttattgctgctcaatccattggggaaccaggaactcaa
ttaactatgagaactttccatactggaggagttgcttctgcctcagatattactcaaggt
cttccaaggatcgaagaattatttgaagtacgcaaacctaaaggaaaagcgctaatcagc
gaattaaaaggaaaaatcaaaaaaattgataaaatccgttcccaaaatccagaaattgta
atcacagaagaaaatgaccctgacacagagcaccgttatattttggaacctaatgtcgat
attttagtaagcaaaaacaacagtgtttatcccggtcaaaaactaacttctggttcggtt
gatctaaaagaacttttaagagtggcaggcacaacagaggttcaaaaatacatcttagaa
gaagtacaaaaagtttatcgtgcccaaaatgtttatatcagcgacaaacacatcgaaatt
attattcaccaaatgtttaaacaaattttaattattgatgaaggtgatactcaactttta
cctggaacagaaattactattaataactttaaaaaagctaatttaaaaatgttagaagaa
aacaaacttttagcagtagggcgccccattattttaggaattacgcgttcttctttaaga
agtgattctttactgtcagctgcatctttccaagaaactactaaaattctaatcgatgct
gccatcaaaggaaaaaccgaccatctttacggacttaaagaaaatgttattattggtggc
ttaattcctgcaggaacaggtattttagaaactactttatttaaatatccaaaagaacct
gcaacaacttctgaacttgctgaaaaaactaaccaaaattaa
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