Mycoplasmopsis bovis CQ-W70: K668_01080
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Entry
K668_01080 CDS
T03268
Name
(GenBank) VACB-like ribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mbq
Mycoplasmopsis bovis CQ-W70
Pathway
mbq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K668_01080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbq03019
]
K668_01080
03016 Transfer RNA biogenesis [BR:
mbq03016
]
K668_01080
Enzymes [BR:
mbq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K668_01080
Messenger RNA biogenesis [BR:
mbq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K668_01080
Transfer RNA biogenesis [BR:
mbq03016
]
Prokaryotic type
tRNA degradation factors
K668_01080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
OB_RNB
HTH_24
S1_RRP5
Dynactin_p22
Motif
Other DBs
NCBI-ProteinID:
AIA33804
UniProt:
A0A059XYX5
LinkDB
All DBs
Position
complement(249188..251377)
Genome browser
AA seq
729 aa
AA seq
DB search
MINEKIIINTIKENPHISTNALLRKLNISPRHNKVLTNMLINLSSRDLIAYDKRDSTYVA
LKKLNTIQGPIHFASEGKCAFIDVEELSKTEAKVSYFVSSNNFNTALNNDIVEAEVFEPI
SPNNNRTFAKVKKIIERKCKTLIGVLDNVNGFVTFKPIEPIYKNTSFRIKNIANEARILD
VVVAEIINYENRNKEINIVKRITDVNDPMAYVKSLEEARNVPKDFPAEVNKYIDEFIPNN
IKNEDLSTRMDLRNELVVTIDGSSTKDFDDAISVVKIDDNTYELGVHIADVAYYVKENTP
LDDEALKRGTSIYLLNEVVPMLPFKLSNGICSLNPNEERLTISCITKINKEGKSISTKIV
PSVIKSKYRLTYERVNEFINDSKVFDDDKLNEMLKNAYELSKIVREFKNKQGYIDFEIQE
PYIELDADGRVIDISVEQTGESEKMIEDFMVRANEEVAKFITDLKLPMMYRIHEVPSEEK
IEYFTDVLKSLKINVSLNRKHITPLSFQKVINQINSQRNDEFLKMLFLRTMQKAVYSPEN
IGHFGLASDCYCHFTSPIRRYPDVIVHRILWEFVFKKQLNKVEDFAANLQKIAAMNSASE
ENAVQLERDVNDLKFAEYFKSKINSEFEGQVFGITKFGMFIQFANKTDAMVHISNIGDGD
YEVNEQMTKLYSRNDPKKAYKLGQTVRVVITNADETTGKIDCVLTQDYQTYLKNKISKNF
NQSKGFNKR
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgattaatgaaaaaataataattaacaccataaaagaaaatccacatatatcaacaaat
gcattattaagaaagctaaacattagccctagacataataaggttttgaccaatatgctt
ataaatctgtcgtctagggatttgattgcatatgacaagagagattcaacatatgtggca
ttaaaaaaactaaatacaattcaaggcccgatacactttgcttctgaaggaaagtgtgct
tttattgatgttgaagagttaagtaaaactgaagctaaggtttcttattttgtttctagc
aacaactttaatacagcattaaataatgatattgtcgaagctgaagtttttgaaccaatt
agtccaaataataatagaacctttgcaaaggttaagaaaataattgaaagaaaatgcaaa
accttaattggcgttttagataatgttaatggttttgttactttcaaacctattgagcca
atttacaaaaatactagttttagaatcaaaaatattgctaatgaagcaagaattttagat
gttgttgttgccgaaataattaactatgaaaatagaaacaaagaaataaatatagttaaa
agaataactgatgttaatgatccaatggcttatgttaagtcattggaagaagctagaaat
gtaccaaaagatttcccggctgaagttaataaatacattgatgagtttattcctaacaat
ataaaaaatgaagatctaagcacacgtatggacttaagaaatgaattagttgttacaatt
gacggctctagtactaaagactttgatgatgctattagcgttgtcaaaattgacgataat
acctatgaattaggcgtgcacattgctgatgtagcatattatgtaaaggaaaatacacct
ttagatgatgaagctttaaaaagaggaactagtatttatcttctaaatgaggtagtgcca
atgttaccttttaaattatcaaatggcatctgctcacttaatccaaatgaagaaagattg
actataagttgcattaccaaaataaacaaagaaggtaaaagcattagtaccaaaattgtt
ccatcagtaattaagtcaaaatataggcttacatatgaaagagttaatgaatttattaat
gattcaaaggtttttgatgatgataagcttaatgaaatgctgaaaaatgcatatgaattg
tccaaaattgttagagaatttaaaaacaaacaaggatatattgacttcgaaattcaagaa
ccttacattgaattagatgctgatggacgtgttattgacattagcgtagaacaaacaggc
gaatctgaaaaaatgattgaagactttatggtgcgagcaaatgaagaagttgctaaattt
attacagatttaaaactgccaatgatgtatagaatacacgaagttcctagtgaagagaaa
atagaatactttactgatgtattgaaatcgttaaaaataaatgtttcattaaacagaaaa
catataactccactatcatttcaaaaggtaattaatcaaataaatagtcaaagaaatgat
gagttcttaaaaatgctttttttaagaacgatgcagaaagcagtctattcacctgaaaat
ataggtcactttggactagctagtgattgctattgccattttactagccctattagaaga
tatcctgatgtaattgttcatagaattttatgagagtttgtttttaaaaaacaattaaat
aaagtagaagattttgctgctaacttgcaaaaaatagcagccatgaactcagctagtgaa
gaaaatgcagtgcaactagagcgggatgtaaacgatcttaagtttgccgaatatttcaaa
agcaaaattaatagtgagtttgagggccaagtttttggcattactaagtttggtatgttt
atccagtttgcaaacaaaacagatgcaatggttcatataagtaatattggtgatggggac
tatgaagttaatgaacaaatgaccaagttatatagtcgtaatgatcccaaaaaggcctat
aaattaggtcaaacagtcagagtcgtaatcaccaatgctgatgaaactacaggcaaaata
gactgtgttttaactcaggactatcaaacatacttaaaaaacaaaatatctaagaacttc
aatcaatctaaaggctttaataaacgttaa
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