Monosiga brevicollis: MONBRDRAFT_34582 Help Entry MONBRDRAFT_34582  CDS       T01042                                  Name (RefSeq) hypothetical protein   KO K12586   exosome complex component RRP43 Organism mbr  Monosiga brevicollis Pathway mbr03018   RNA degradation Brite KEGG Orthology (KO) [BR:mbr00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     MONBRDRAFT_34582  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:mbr03019]     MONBRDRAFT_34582 Messenger RNA biogenesis [BR:mbr03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Core exosome factors      MONBRDRAFT_34582 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Aminotran_1_2 PDT TYRAAT1_C RNase_PH F420_oxidored PDH_N RNase_PH_C Aminotran_5 NAD_binding_2 DegT_DnrJ_EryC1 GFO_IDH_MocA Cys_Met_Meta_PP Rossmann-like Motif Other DBs NCBI-GeneID:  5895761 NCBI-ProteinID:  XP_001750502 JGI:  34582 UniProt:  A9VCN5 LinkDB All DBs AA seq 1499 aa AA seqDB search MRRRRRRGVSRQQVATSTRGGNSCSRSLINRRCKPSSPTAKLTFRGAWASRPLADARRSF HDADDDAAAISKRERDRERETERHHGDPKSYRTVCVCVCVCVCVAGNLDVTVTALEARCV CVCVCVSVCVCVCVCVCVCLSVCVCVCVCIPIENTLGGSIHTNFDMLLRYNLRIVAELNF RVQHCLMCLPDVDRSEITLVKSHPQALAQCDNYLRSCGFASQADHDTAGSAQHISQNKER NCAAIASRLAASHYNLKVEALAFSLPSPILAEGIEDSSSNYTRFLLLRREPIVTPFSVRA KTSIVFSLTNATGALFKAIACLAMRDIDMTKIESRPGTVNVAGQGESGQLAPQQAGFAQQ GSSQFQYMFYVDFYGNVADPNVTSALEHLAELTSYLRVLGCYPTDGVLISPLQQVAPTTK RAKRDIAGLASTTNGQAAALASAPKATPTQAPDSNAASAPVPTTTRQPAKRETASLGPSP NPARLHIGIVGFGNFGQFMARSFVKDPHNVVYATSRSDYTEAAQRLNVHFATSLAAIDAQ ARDIKARAGQPAPTGLDVLILAPSILSFEHVVAQLIADPDLVAGRLVVDVLSVKSHPKHV LLSQLPASCDIVCTHPMFGPESGRHGWQDLPFVYETVRCKSTHLWRLQEFLDLFKNQGCR MVEMSCEEHDRHAAGSRVLSELGLASTPINTKGYQTLLTLQENTCKDSFDLFMALFKFNR NSLKTLDDFAHAFERVAGQLREAAGPGAGGGSQKDFNPVIASMQGSSTVAVHTRTNELIA QGRDIVQLNVGEPDWHCPPGVITACKEALDNHFMKYTSVAGTAELRQEVAKYMVQHRGVQ CEAHNVVVSSGAKQSLFQVCMALCRSGDEVILPAPYWVTYREQPMFAGARVRVVNCRPEA NFLMEPEDLRRALSPRTRLLILCNPSNPTGAVYTTEQLQQLLAVLQEPAYKHVWLVSDEI YHQLVAEPEAPLPVSAASLPGMHDRTIVVDGVSKSYAMTGMRIGWIVAPFHVATAVSKLQ GQGAVAALRTGVEYQQQVRRNLQTRCTLVYEALAALAPYGVTVQKPQGAFYIFPHVARLF GKTTPQGTKIVNGDDFCTAALEEANISMVPGSGFGAPEHIRISYTASEAALHQAMQSLTA FPAMCCMHDKPQPFRFIFMQEPKRIQWKNLYPHTTPRLTKSMQQTPYHLHLYSACDDHST RIMSEDEKNGGDGDGFAGGRCLQDAGVRPDGRELAEPRVTRVSVNVVQSANGSSMVVMGK TSVMASLKAEFANPPLNPNAASGWLVANVTMPPMCSSTITPGPPSTQARALSTFLSDILL RHNVVRPEQLVIKANKLVWCLFLDVVVLNDDGNLPDAILLAAAAALQTATLPTVESADEN EDAGEDTIPTVDPSQRVALSLGQLPLAATMAWLHQDAEEILVDPTHEEENMATACMTVVM QGDKVLRTDLPSVHVAPSTMQTVMPLPVSAMQAAVRSAAVRTQELQGLLRSAVDSAATV NT seq 4500 nt NT seq  +upstreamnt  +downstreamnt atgcggcggcggcggcggcgtggtgtgtcacgtcagcaggtggcgacaagcacgcgaggc ggcaacagctgcagccgcagcctgatcaacaggagatgcaagccatcaagccctacggca aagctcaccttccgtggcgcctgggcttcgcggcccttggccgatgccaggcgatccttc cacgacgccgacgacgatgccgctgccatttcgaagagagagagagacagagagagagag acagagagacatcatggtgacccgaaaagttatcgcaccgtgtgtgtgtgtgtgtgtgtg tgtgtgtgtgtggctggcaatttggacgtcaccgtgacggctctggaggcgcgctgtgtg tgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctg tctgtctgtgtgtgtgtgtgtgtgtgtattccgatcgaaaacacgctgggtggctcgatt cacacaaactttgacatgctcctccgctacaacctccgcatcgtggccgaactcaacttt cgggtgcaacactgcctcatgtgcctccccgacgttgaccgaagcgagattaccttggtc aaatcacaccctcaggcgctggcccagtgcgacaactaccttcgctcctgcgggtttgcc tcacaggctgaccacgacactgctggcagtgcgcagcacattagccaaaacaaggagcgc aactgcgccgccattgccagccgcctcgctgcctcgcactacaacctcaaggtagaagcg ctggccttctctctcccgagtccgattctggccgaaggcattgaagatagctcctccaac tacacccgctttcttctcttgcgccgggaacccatcgtcacccctttctccgtccgtgcc aaaacttccattgtcttctcgttgaccaatgccaccggtgccctgttcaaggccattgcc tgcttggccatgcgggacattgacatgaccaaaattgaatcacgcccaggcactgtcaac gtagcaggacagggcgaaagtgggcaactggctccgcagcaggctggttttgctcagcag ggcagctcccaatttcaatacatgttctacgtcgacttttacggcaacgtcgccgacccc aacgttaccagcgccctagaacacctggcagaactcacctcctaccttcgcgtcctcggt tgctaccccaccgatggcgttctcatttcccctctgcaacaggtggcccccaccaccaag cgcgccaagcgcgatatcgctggtctagcatcgacgacaaatggccaagctgctgccctg gcatctgcgcctaaagcaaccccaacgcaggccccagattccaacgccgcgtcagccccc gtacccaccacaacccgccagccggcaaagcgtgaaaccgccagtctcgggcccagcccc aatcctgcccgccttcacattggaatcgtcggatttggcaactttggacagtttatggcc cgaagctttgtcaaagacccgcacaacgttgtgtatgccacctcacgctccgattacacg gaagcagcccagcgtctgaacgtgcactttgccacatcgctcgcagccattgatgcccaa gcccgcgacatcaaggctcgtgctggacaaccagcccccacgggcttggacgtcttgatc ttggcccccagcattctgtcctttgagcacgtggtggcacagctcatcgccgatccggac ctcgtagctgggcgacttgtggttgacgtgctgtcggtcaagagccaccccaagcacgta ctcctatcccaactgccggcaagctgcgacattgtgtgcacgcaccccatgtttgggcct gagagcgggcgtcatggctggcaagacttgccctttgtgtatgaaacagtgcgctgcaag agcacgcacttgtggcgcctgcaagaatttctggacctgttcaaaaaccaaggctgtcgc atggtcgagatgagctgtgaggagcacgatcgtcacgccgccggaagtcgcgttctctcc gagctcgggctggccagcactcccatcaacacaaagggctaccagaccttgctcacgctg caggagaacacgtgcaaggactcctttgacctcttcatggcgctcttcaagttcaatcgc aatagcctaaagactcttgatgactttgcacacgcgtttgagcgtgtggcaggccagctt cgcgaggctgcggggccgggcgctggaggtggctctcaaaaagatttcaacccggtcatc gcctccatgcagggctcctccacggtcgccgtgcacacccgcaccaacgagctgattgct caggggcgagacattgttcagctcaatgtcggggagcccgactggcattgcccgcccggt gttatcacggcctgcaaagaggccctcgacaaccactttatgaagtacacgagcgtcgcg ggcaccgctgagctgaggcaagaggttgccaagtacatggtgcagcaccgtggggtgcag tgtgaagctcacaacgtcgtcgtttcgagcggtgccaaacagtcgttgttccaggtgtgc atggcgctatgccggagcggtgacgaggtcattttgcctgctccttactgggtcacgtac cgcgagcagcccatgtttgccggagcacgcgtgcgggtggtgaattgtcgccccgaggcc aattttctcatggagcccgaagatcttcgccgtgctctgtcaccccgcactcgcttgttg attttgtgcaacccgtccaaccccacgggtgcggtttataccacggagcagctgcagcaa ctcctggccgtgctgcaggagcctgcttacaagcatgtgtggttggtttcggatgagatt taccatcaactggttgcagaacccgaggcccccttgcccgtgtctgccgcttcattgcca ggcatgcatgaccgcaccatcgtggtggatggtgtgtccaagtcgtacgccatgacgggc atgcgcattggttggattgttgcgcctttccacgtcgcaacggccgtcagcaagctgcag ggccaaggggccgtggcagccctgcgcaccggcgtggagtaccagcagcaggtccggcgc aacctccaaacccgttgcaccctagtgtatgaagcactagcggcacttgcaccttacggc gtaaccgtacaaaagccccaaggcgccttttatatctttccccatgtggcgcgcctcttt ggcaagaccactccacagggaaccaagattgtgaatggtgatgacttttgcaccgccgct ttggaagaggccaacatttccatggtacccggttcgggctttggcgcacctgagcacatt cgcatctcctacacggccagcgaagctgctctgcatcaagcaatgcaaagccttactgca tttccagccatgtgttgcatgcatgacaaaccgcagccgttccgcttcatcttcatgcaa gaacccaaacgcatccagtggaagaacctgtacccacacacaactccacgtttgaccaag tctatgcaacaaaccccctatcacttacacttatattccgcttgtgacgatcattccacc cgaattatgagcgaggatgagaaaaatggcggcgacggcgacggattcgcaggcggcaga tgccttcaagatgcgggcgtgcgaccagacggccgtgagctggccgagccgcgtgtgacg cgagtcagcgtcaatgtggtccagtctgccaatggctcaagcatggttgtgatgggcaag accagcgtcatggcttctctcaaagcggaatttgccaatccgcctctgaatcccaacgcg gccagcggttggctggtggccaacgtgacaatgcctcccatgtgctcgagcaccatcaca cccggacccccaagcacccaagcgcgggccctgtccacctttttgagcgacattcttcta cgacacaacgtggtcaggcctgagcagctggtcatcaaagccaacaaactagtgtggtgt cttttcttggatgtcgtcgttctaaatgatgacggcaacttgcccgatgccatcctctta gccgctgcggcggcgctgcagactgctacgcttccaacggtcgagagtgcagacgagaac gaggatgccggcgaagacacaatccccacggtcgatccttcccagcgcgttgccctttcc ctgggccagctgccactggctgccaccatggcctggttgcatcaggatgccgaggagatt ctcgtggaccccacccatgaagaagagaacatggcgactgcttgtatgacggtggtaatg caaggcgacaaggtgctgcgcaccgacttgccctctgtgcacgttgctccctcgaccatg cagaccgtcatgcccctcccggtttctgccatgcaagctgctgttcgcagcgccgcggtc cgaacacaagaacttcaaggtttgctgcgttctgccgttgactctgccgccacagtctga

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