Monosiga brevicollis: MONBRDRAFT_35219
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Entry
MONBRDRAFT_35219 CDS
T01042
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mbr
Monosiga brevicollis
Pathway
mbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MONBRDRAFT_35219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbr03019
]
MONBRDRAFT_35219
03041 Spliceosome [BR:
mbr03041
]
MONBRDRAFT_35219
03009 Ribosome biogenesis [BR:
mbr03009
]
MONBRDRAFT_35219
03016 Transfer RNA biogenesis [BR:
mbr03016
]
MONBRDRAFT_35219
Enzymes [BR:
mbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MONBRDRAFT_35219
Messenger RNA biogenesis [BR:
mbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
MONBRDRAFT_35219
Spliceosome [BR:
mbr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
MONBRDRAFT_35219
Complex C
U4/U6.U5 tri-SnRNP related factors
MONBRDRAFT_35219
Ribosome biogenesis [BR:
mbr03009
]
Eukaryotic type
Pre-60S particles
Helicases
MONBRDRAFT_35219
Transfer RNA biogenesis [BR:
mbr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
MONBRDRAFT_35219
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
MTR4-like_stalk
DEAD
Helicase_C
ResIII
DEXQc_Suv3
nSTAND3
PUB_1
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
5892905
NCBI-ProteinID:
XP_001747752
JGI:
35219
UniProt:
A9V4P7
LinkDB
All DBs
AA seq
940 aa
AA seq
DB search
MAEGSRNIIATGAKACTHEVALPQGYNYIPLKDTPLPKQMAKEYPFTLDPFQREAIRCIE
RSESVLVSAHTSAGKTVVAEYAIALSLREGQRVIYTSPIKALSNQKYRELAEEFGDVGLM
TGDTTINPTASCLVMTTEILRSMLYRGSEIMREVGWLSLMRFTTCVTRSAVPSFSYLTTS
TTSSSPPPFPTPFNLRSGSPCHVVYTNYRPTPLQHYLYPQGGDGLHLVVDETGAFREDSF
MKAMMSLSEGGAANKQRSKHQKGKSPMRSMVRMIMKRGYQPCIVFSFSKRDCETYAMQCS
LEDFTTSEEKQQIEMIFKNAIDILSEDDKQLPQVSQVLPLLLKGIGIHHGGLLPLIKEVI
EILFGEGLLKVLFATETFAMGLNMPARTVVFTNARKYDGTEHRWLTSGEYIQMSGRAGRR
GLDDRGIVILMMDEKVEPTFAKQMLQGQADQLNSAFHLTYNMVLNLLRVEEVNPEYMLQR
SFRQFQNSQAIPGLEAKIAERQRQHDEIVIEDEAKVEEYYNIRKQLESFGEELRTLITEP
QTIVPFLQPGRVVEVRDGEQNFGWGIVVDFKERAVKSKRNGKNQAEEKQIVVTTLLHVAS
DAGNKKPRPISTPTDKGEYKVTPVLLPVLSQISKVRLFLPKDLSGADKRRAAFNALQEAI
RRFPEGLPLLDPIEDMKISTDYARGLVGKIQTLETRLFAHALHESEKRDDMMALFVTKVR
LRELVSSLKKDLKQSHSIQQLDELKNMKRVLRRLQFTTNDDVIELKGRVACEVSTGDELL
LTELMFNGIFNELSMAHSVALLSIFILGTANSKEKEKEKSPVEKDLTNTLNQVQENARRI
ARVSIDTKLDVDMQSYAEQFPVEMLEVVHDWAQGRKFSEICEKTDMFEGSIIRAMRRLEE
LLKQMIAAAKAIGNTELENKFAEGVTAIRRDIVFAPSLYL
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggccgagggctcgcgcaacatcatcgctaccggagccaaggcttgcacccatgaagtt
gccctgcctcagggctacaactacatccccttgaaggacacgccacttcccaagcaaatg
gctaaagagtacccgttcactctggatcctttccagcgggaggccattcgttgcatcgaa
cgcagtgagagcgttcttgtgtcggcgcacacttcggctggtaaaacagttgttgctgaa
tacgccatcgccctctcgctgcgcgagggccaacgcgtcatctataccagtccaatcaaa
gccctcagtaaccagaaataccgcgagctcgccgaagagtttggtgatgtcgggctcatg
acaggcgataccaccatcaacccgacggcgtcgtgcctcgtcatgacaacagagattctc
cgctccatgctttaccgcggctctgagattatgcgtgaagtcggctggttgtctttgatg
agattcactacatgcgtgaccaggagcgcggtaccatcattctcttacctgacaacgtcc
actacgtcttcctctccgccaccattcccaacgcccttcaatttgcgcagtggatctccg
tgccatgtggtgtataccaactaccgccccacccctctgcagcactacctgtaccctcag
ggtggcgatggcctccacttggttgtcgatgaaaccggtgcattccgcgaagatagcttt
atgaaggccatgatgagcctatcagaagggggtgcggccaacaagcagcgctcaaagcac
caaaaaggcaaatcacccatgcgctctatggtgcgcatgatcatgaagcgaggctatcag
ccttgcattgtcttctccttcagcaagcgtgactgcgagacttacgccatgcaatgttcc
ctggaggatttcacaacctcggaagagaagcagcagatcgaaatgattttcaaaaatgcc
attgatatcttgagcgaggatgacaagcagctgccacaggtcagccaagtcttgcctttg
ctgctcaagggcattggtattcaccatggtggacttttgcccctgatcaaagaggtcatt
gagattctctttggcgagggcctgctcaaagttctttttgcgaccgagacctttgccatg
ggcctgaacatgcctgcccgcaccgtcgttttcaccaacgctcgcaaatacgacggcact
gaacatcgctggctcacttcgggcgaatacattcagatgtctggtcgtgccggccgtcgt
ggtctggatgatcgtggcattgtgatcctgatgatggacgaaaaagtagagccaaccttt
gccaagcagatgctgcaggggcaggcagatcaactcaactcggcctttcacctcacgtac
aacatggtgctcaaccttttgcgtgtcgaggaggtcaatccagagtacatgttgcagcgt
tcgttccgccaattccagaattctcaagccattccgggcctcgaggctaaaattgccgag
cgccagcggcaacacgatgagattgtcattgaggacgaagcaaaggtcgaggaatactac
aacattcgcaagcagctcgagtcattcggcgaggagctgcggactctcattacggagcca
cagaccattgttcctttcttacagcccggtcgtgtggtcgaggtgcgcgacggcgagcaa
aactttggctggggcattgtggtggactttaaggagcgtgcggtgaaaagcaagcgtaac
ggcaagaatcaagcagaggagaagcagattgttgtaaccacgcttttacacgtggcctcg
gatgccggcaacaagaagccacgccccatttcgacgcccaccgacaagggcgagtacaag
gtgacgcccgtgttgctgccagtgctgtcacagatatcaaaggtgcgcctcttcttgccc
aaggatttgtctggtgctgataaacgccgcgcagcattcaacgctttgcaagaggccatt
cgacgcttcccggaagggttgcctttgttggacccgattgaggatatgaaaatttccacc
gactatgcgcgcggccttgtgggcaagatccagactttggagacgcgtctttttgcccat
gcgttgcatgagagtgagaagcgcgatgacatgatggccttgtttgtgaccaaggtgcgc
ctgcgcgagcttgtgtcctcgctcaagaaggacctcaagcagagtcacagcattcagcag
ctggatgagctgaagaacatgaagcgcgtcctccgccggttgcaattcacgacgaatgac
gacgtgattgagctgaagggccgcgtggcctgtgaagtgagcacgggcgatgagcttttg
ctgacagaactgatgttcaatggcattttcaatgaattatcaatggcgcacagcgtggcc
ttgctatccatctttatcctcggcacagccaatagcaaggagaaggaaaaggaaaagtca
ccagttgagaaggatctcaccaacacgctcaatcaagtacaggaaaatgcacggcgaatt
gctcgcgtgtcgattgacaccaagctggatgtggacatgcagagctacgccgagcaattc
ccagtggaaatgctggaggtggtgcatgactgggctcaaggacgcaagttttccgagatt
tgtgagaagacggacatgttcgagggtagtatcatccgtgccatgcgtcggctggaagag
ctgttgaagcagatgattgctgcagccaaggccatcgggaacacggagctggaaaacaag
tttgccgagggggtgacggcgattcgtcgtgacattgtatttgcgcccagtttgtatctg
taa
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