Mycobacterium branderi: MBRA_47240
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Entry
MBRA_47240 CDS
T07397
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mbrd
Mycobacterium branderi
Brite
KEGG Orthology (KO) [BR:
mbrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mbrd03016
]
MBRA_47240 (rtcB)
Enzymes [BR:
mbrd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MBRA_47240 (rtcB)
Transfer RNA biogenesis [BR:
mbrd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MBRA_47240 (rtcB)
Prokaryotic type
tRNA splicing ligases
MBRA_47240 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BBZ14529
UniProt:
A0A7I7WAA3
LinkDB
All DBs
Position
4849648..4851084
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AA seq
478 aa
AA seq
DB search
MRISSSALIAETPFRFRIDRSGAMLVPGVIFASRSLLPETNLDPLLQQVANVATLPGIVE
ASYAMPDIHLGYGFPIGGVAATDVRDGGVISPGGVGFDISCGVRLLAADIDREDFVAAAG
KVMDGLSRRIPRGAGPGAVWSQVSESELDEVLRGGARYVVEHRGGSALDLDRCEDGGAFD
DADPDAVSEQARARGIRQLGSLGSGNHFLEVQAVSEVFDEPVAKTFGLRVGQVCVMIHCG
SRGLGHQICTDAVRTLDQSMRRHGVQVPDRQLACAPVDSTEGGRYLAAMSAAANYARANR
QLLGSSASDAFKAITGKGLELVYDISHNLARIEHHEVDGQTLELCVHRKGATRALPPGHP
DLPTDLADVGQPVLIPGSMGTSSYVLAGVRGGGAFHSTCHGAGRRLSRHQAARSVSPKVL
LDQLERQQGIHVRGASRRGLVEEAPAAYKDVAEVVAVAEQAGLCHTVARLVPLGVVKG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgcggatctcatcgtcggcgctgatagcggaaacaccgtttcgcttccggatcgaccga
tccggcgccatgttggtgcccggggtgatcttcgcgtcgcgctcgctgcttcccgagacc
aacctggatccgctgctgcagcaagtggcgaacgtcgcgacccttcccggaatcgtcgag
gcctcgtatgcgatgccggacatccacctgggatacgggtttccgatcggtggtgtggcg
gccaccgatgtgcgcgacggcggcgtgatctcgccgggcggagtgggattcgacatctcg
tgcggtgttcggctgctggccgcggacatcgaccgagaggacttcgtcgctgccgccggc
aaggtgatggacggattgagcagacgcatcccgcggggtgcgggcccgggagccgtgtgg
tcgcaggtgagcgagagtgagttggacgaggtgctgcgcggcggcgcgcgctacgtggtc
gagcatcgcgggggctctgcgctggacctggatcgctgcgaagacggcggcgcgttcgac
gacgccgaccccgacgcggtgagcgagcaggcacgtgcccgggggatccgtcagctcggc
agcctcggttcgggcaaccacttcctggaagtccaggccgtatccgaggtgttcgacgag
ccggttgccaaaacgttcggcctgcgcgtcgggcaggtctgcgtgatgatccactgcggc
tcgcggggccttggacaccagatctgcacggacgcggtgcgcaccctcgaccagagcatg
cggcgacacggcgtgcaggtccccgaccggcaattagcctgtgcaccagttgattccacc
gaaggcggccgctacctggcggcgatgtcggccgcagccaattacgctcgcgccaaccgt
cagctcctcgggtcgtcggcaagcgatgcattcaaggccatcaccggcaaggggctggaa
ttggtgtacgacatctcgcacaaccttgcccggatcgagcaccacgaggtcgacggccag
acactcgagctttgcgtgcaccgcaagggcgcaacacgcgcgttgccacccggacatccc
gatctgccaacggatttggctgacgtggggcaaccagtgctgattcccggctcgatgggg
acgtcgtcgtacgtgctcgccggcgtgcgaggcggcggtgcgtttcattcgacgtgtcac
ggcgccggccggcggctcagtcgacaccaggcggctcgctcggtgtcgccgaaggtcctg
ctggaccaactcgagcggcagcagggcatccatgtcaggggcgcctcacggcgcggcctg
gtcgaggaggcgccggcggcctacaaggatgtcgccgaagtcgtcgccgtcgcggaacag
gccgggctgtgccacacagtcgcccgactggtgcccctgggcgtcgtgaaaggctga
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