Microbulbifer bruguierae: PVT68_00190
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Entry
PVT68_00190 CDS
T09733
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mbrg
Microbulbifer bruguierae
Brite
KEGG Orthology (KO) [BR:
mbrg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mbrg03016
]
PVT68_00190
Enzymes [BR:
mbrg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PVT68_00190
Transfer RNA biogenesis [BR:
mbrg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PVT68_00190
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
DUF5667
Motif
Other DBs
NCBI-ProteinID:
WGL16740
LinkDB
All DBs
Position
complement(40282..42252)
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AA seq
656 aa
AA seq
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MLNADALKQLSQLKSDIRSTKEFAEGRVRGSSGKFGFVVLDDGREAFLPPAEMDRVFPGD
RVRASLTEEENGKLSAELDSLIESDLKYLVGQYIQRGQGHFIQPSDNALSRWIFLPPKAR
SSAQPGDFIACSVTRHPFKDGKSQAKVESVIGKPDLAGIEHAFVVAQYRLPNQFSKAALE
QAQQIPEQLESLCGDRKDLSSLGFVTIDAESTRDMDDALAVSESENGWTLHIAVADPSSL
IATGTALDKDAYQRANSVYLAGETLPMLPANLCENSFSLLPGELRPALVMHVAVGKDGAL
NGFEYEFAAIRSQHKLSYQQVAAFIEGNDSAVPAEQQEQLRSLGALSKARAEYRAGHSLI
MEDRPDYELILNTQRKIERIEKQPRTAAQRMVEEAMLAANFSAGEKLAQLGAGCFSVHLG
FRDERMAEIRALLKEVLPEFAEQDLHQLDVYLKLVKQLESHSDTAMHNVLAVLKRMLRPG
ELSHSAAAHLGLGIAHYATVTSPIRKFNDLHNHRVLRAALEGNDLPALNESASGELQQSV
STGRQADRALQQWLYCQYLESKVGEIFSGQITLVNGAGIGVRLEDNGINGFVRFNSKKQP
FEFDGKHLRITRGEESFQLEQQVQVKLSAVDTEKRRIAFELVTDELATEAAPATNE
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgcttaatgccgatgccctcaaacagctttcccagctgaaatccgatatccgctccacc
aaagaatttgccgaaggccgcgtgcgcggcagcagcggaaaattcggattcgtggtgctg
gatgacggccgcgaggcattcctgccaccggcagagatggatcgggtattccccggcgac
cgggtgcgcgcaagcctgacggaagaggaaaacggcaagctgtccgcggagctggattcg
ctgattgaatcagacctcaagtacctggtaggtcagtacattcagcgcggccagggtcac
tttatccagcccagtgacaacgccctgtctcgctggatttttttgccacccaaagcccgt
agctccgctcaacccggcgatttcatcgcctgcagtgtgacccgccacccgttcaaggac
ggcaaatcccaggcaaaggtcgagagcgttatcggcaaaccggacctggcgggcatcgag
cacgcctttgtggtcgcccagtaccgtttgcccaaccagttcagcaaggccgccctggaa
caggcgcaacagattcccgaacaactggaaagcctgtgtggcgaccgcaaagacctgtcc
tccctgggctttgtgaccattgatgcggaatccacccgggatatggacgatgcgctggca
gttagcgagtccgaaaatggctggaccctgcatattgcggtcgccgacccttcgagcctg
atcgccaccggcactgccctcgataaagacgcctaccagcgagccaacagcgtttacctg
gccggcgaaaccctgcccatgttgcctgcgaatctgtgcgaaaacagcttttccctgctg
cccggagaactgcgcccggcactggtgatgcatgttgcggtgggcaaagacggcgccctg
aatggtttcgagtacgagttcgccgcgatccgctcgcaacataaactgagctaccagcag
gtagccgcatttatcgaaggtaacgacagcgccgtgccagcagagcagcaggaacagctc
cgcagcctgggtgcactcagcaaagcgcgcgccgagtaccgcgccggtcactccctgatc
atggaggaccgaccggattacgagctgatcctcaacacacagcgcaaaatcgagcgcatt
gaaaagcaaccccgcaccgcggcccagcggatggtggaagaagccatgctggcggccaat
ttcagtgccggcgaaaaactcgcgcaactcggcgctggctgcttttccgtacacctgggg
ttccgcgacgagcgtatggccgagatccgcgcgctgctgaaagaggtgctgccagagttc
gccgagcaggatctgcaccaacttgatgtttacctgaaactggtaaaacagctggagtcc
cacagcgatactgccatgcacaatgtgctcgctgtacttaagcgcatgttgcgcccggga
gagttgagtcacagtgccgcggcccacctgggactgggcattgcacattacgctaccgtc
acctccccgatccgcaaattcaacgatctgcacaaccatcgcgttttgcgcgcagcactg
gaaggtaatgatctcccggcgctgaatgaatctgccagcggcgaactgcaacagagtgtc
agcactggtcgccaggcggacagagcactacagcaatggctgtattgccagtacctggaa
agcaaggtgggtgaaatattcagcggccagatcaccctggtgaacggtgccggtatcggc
gtgcgcctggaagacaatggcatcaacggttttgtgcgcttcaacagcaaaaagcagccg
ttcgagttcgacggcaaacacctgcgcattactcgcggtgaagagtccttccagctggag
cagcaggtacaggtaaagctcagtgccgtggataccgaaaaacgtcgcattgcttttgag
ctggtgacggatgaactggcaactgaagctgcacctgccaccaacgaataa
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