Microbulbifer bruguierae: PVT68_01605
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Entry
PVT68_01605 CDS
T09733
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mbrg
Microbulbifer bruguierae
Pathway
mbrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVT68_01605 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbrg03019
]
PVT68_01605 (rne)
03009 Ribosome biogenesis [BR:
mbrg03009
]
PVT68_01605 (rne)
Enzymes [BR:
mbrg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PVT68_01605 (rne)
Messenger RNA biogenesis [BR:
mbrg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PVT68_01605 (rne)
Ribosome biogenesis [BR:
mbrg03009
]
Prokaryotic type
rRNA processing factors
PVT68_01605 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WGL17007
LinkDB
All DBs
Position
complement(359689..362787)
Genome browser
AA seq
1032 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFIKQPKEIEGRIKIKDVVKEGMEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGDDRSELRDALSSVDVPSGMGIIVRTAGVGRSGEE
LQWDLNYLLQLWTAIKKEADDSKAPHFLFQESNVIIRAIRDYMRDDIGEVIVDENGAYQL
AAEFARQVMPNYAHKVKFYDDNIPLFNRYQIESQIETAFEREVKLPSGGSIVIDVTEALV
SIDINSSRATKGGDIEETARTINLEAADEIARQLRLRDMGGLVVIDFIDMQSKSNQREVE
KRMEKALGMDRARVQVGRISRFGLLEMSRQRLRPSLGETTFRVCPRCSGQGTIRGTKSLA
LSILRLVEEEAKKERSAEIRAITPVNVATYLLNEKRKAISNIEARNNTRVVVVPNADLET
PHFEVQRLRDDDSATLETSYKIASSIEEVADKNQEEEPLRAPAQPAVQQIAHTAPAPSPA
EKPKAKASKESKPGLFSRLISAITALFSGEEESSNKKHQKGKGRGKNYQQRNRSQRGGRG
RGRNTRGGRRDDQRSDERKDERKDERKEDTRSKRNDKRREDTEATERRSDNRDNARSESG
REQSRDGNREGQRRSRRRRGGDRRSEQQSPAAEVETTNLDSAAIEVAETGDDQQRPSRRP
SNVRARPQPRRRGRRGETGGADESESAEQQELNREVNEAIDSAEREATAKPRPERKPQEK
PAEKPVQKQPEQQAEKQIAEPAQAARKPSGDRPQPARQEVAQKAEKPPVEAQPAAEPASA
TSVQASSAHPEAVDAAEAPKAEVAEAPKAEAPVEAAPVKETKPAVEEEKSQAESPWNTAA
IAPSEPAEVEETPAVLEDATQESTAEITEVPAEEVPVPVTETAEAPSAEKVAAPHAAAKT
TRASNDPRVNPNPLGEFEIVTARPAIGELRPLDTAQPAAIQHQPRPLQRPVNDPRVKRSA
TVEADSDSAEAS
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgctgatcaacgcaacccagccggaagagctgcgcgttgcactggtcgat
ggccaatggctgtacgacctcgatatcgaaaaccgcacccgcgaacaaaaaaaagccaac
atctacaaaggtaaaataacccgcgtagaaccctcccttgaagccgcttttgtcgactac
ggcgctgagcgccacggcttcctgccgctgaaagaaatatcccgcgaatacttcataaaa
cagcccaaagagatcgaaggccgcatcaaaatcaaggatgtggtcaaagagggcatggaa
gttatcgtccaggtggacaaagaagagcgcgggaataagggcgcagcgctgaccaccttt
atcagcctcgctggccgctatctggtattgatgcccaataacccccgtgctggcggtatt
tcacgccgcattgaaggcgacgatcgcagcgaactgcgcgatgccctctccagcgtcgac
gtcccctccggtatgggcatcatcgtacgcaccgccggtgtcggccgcagtggcgaagaa
cttcagtgggacctcaactacctcctgcagctgtggacggcgatcaagaaagaggcggat
gactccaaggccccccatttcctgttccaggaaagcaacgtcatcatccgcgcgatccgc
gactatatgcgagacgatatcggcgaagtcatcgtcgatgagaatggggcttaccaactg
gcggcagagttcgcccgtcaggtcatgccgaactacgcccataaggttaagttctacgac
gacaacatcccgctattcaatcgctaccagatcgaaagccagatcgagaccgcgttcgag
cgcgaagtgaaactgccttccggtggctccatcgtcatcgacgtcaccgaagccctggtg
tctatcgacatcaactcctctcgcgccaccaaaggcggcgatattgaggaaaccgcgcgc
accatcaacctggaagcggccgacgagatcgctcgccagttgcgcctgcgcgatatgggt
ggcctggtagtcatcgactttattgacatgcagagcaagtccaaccagcgcgaagttgaa
aagcgtatggagaaggccctcggcatggatcgtgcccgcgttcaggtaggtcgcatttcc
cgcttcggtctgctggaaatgtcccgccagcgcctgcgcccctccctgggtgaaaccact
ttccgtgtgtgcccccgctgcagcggccaaggcaccattcgcggcaccaaatccctggca
ctgtctattctgcgcctggtagaagaggaagccaaaaaagagcgcagcgccgagattcga
gcaatcactccggtgaacgtcgcaacgtacctgctcaacgaaaagcgcaaggcgatctcc
aatattgaagcgcgcaacaatacccgcgtggtggttgttcccaacgccgatctggaaacc
ccgcatttcgaagtccaacgcctgcgtgatgacgattccgctactctggaaacgtcctac
aaaatcgccagctcgatcgaagaagtggctgataaaaatcaggaagaggaacctctgcgc
gcaccagcacagcccgcagttcagcagattgcccacactgcaccggcaccctctcctgca
gaaaagccgaaggcaaaagctagcaaggaatccaaaccgggactgttcagtcgcctgatc
agcgctatcaccgcgctgttcagtggcgaagaagagtcctctaacaaaaagcaccagaaa
ggcaaaggacgcggcaagaactatcagcagcgcaatcgcagccagcgtggcggtcgcgga
cgcggacgcaatactcgcggtggccgccgcgacgatcagcgtagcgacgagcgcaaagac
gagcgcaaagacgagcgcaaagaggacactcgctccaagcgtaacgacaagcgccgcgaa
gacactgaagccacagagcgtcgcagtgataaccgcgataacgcacgcagtgaatccggg
cgcgagcagagcagagatggcaaccgtgaaggccagcgtcgcagccgacgtcgccgtggc
ggtgatcgccgcagtgagcagcagagcccagccgccgaggtggaaaccaccaacctcgac
agcgcggctatcgaagttgcagaaaccggcgacgatcagcagcgtccatcgcgccgtccc
agcaacgtgcgcgcccgtccgcagcctcgccgtcgcggtcgtcgcggtgaaaccggtggc
gccgatgaaagcgaaagcgccgaacagcaggaactgaaccgtgaggtaaacgaagccatc
gatagcgccgagcgtgaagcgacggccaaaccgcgcccggagcgcaagcctcaggaaaaa
ccggctgaaaagccggtgcaaaagcaaccggagcaacaggcagagaaacagatcgccgag
cccgcacaagcagcacgcaaaccctcaggcgaccggccacagccagcccgccaagaagta
gcgcagaaagccgaaaagccgcctgtagaagcgcaaccagcagctgagccggccagcgca
acatctgtgcaagcctccagcgcgcatcccgaagccgtagacgctgcagaagcgcccaaa
gcagaagttgctgaagcgcccaaagcggaagccccggtagaagcagcaccggttaaggaa
acaaaacccgctgtcgaagaggaaaaatcacaggctgaatcaccgtggaacaccgctgct
atcgcgccgagcgagccagcagaggtggaagaaactccagcagtgcttgaagacgctact
caagagtcaaccgcggaaattactgaagtgcctgccgaggaagtccctgtaccggtaact
gagacagctgaagccccatcggcagaaaaagtggcagcgccgcacgccgcggcaaaaacc
acccgcgccagtaacgaccctcgtgtaaaccccaacccgcttggagagttcgagatcgtt
accgcgcgcccggcaatcggcgagctgcgccctctggatactgcacaaccagcagccatc
cagcaccagccccgcccactgcaacgcccggtgaacgaccctcgggttaagcgcagtgct
acagtggaagccgacagcgactccgccgaagccagctga
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