Microbulbifer bruguierae: PVT68_08280
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Entry
PVT68_08280 CDS
T09733
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mbrg
Microbulbifer bruguierae
Pathway
mbrg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mbrg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PVT68_08280 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbrg03021
]
PVT68_08280 (rpoC)
03400 DNA repair and recombination proteins [BR:
mbrg03400
]
PVT68_08280 (rpoC)
Enzymes [BR:
mbrg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PVT68_08280 (rpoC)
Transcription machinery [BR:
mbrg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PVT68_08280 (rpoC)
DNA repair and recombination proteins [BR:
mbrg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PVT68_08280 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WGL18281
LinkDB
All DBs
Position
complement(1921099..1925328)
Genome browser
AA seq
1409 aa
AA seq
DB search
MKDLLNLVKAQDQLEEFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTDPGMTTLERGQLLNDEQYFEAMEEFADEFEAKM
GAEAIQELMNDIDLPQEIQRLREEIPATNSETKIKKLSKRLKLLEAFYKSGNKPEWMVMQ
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFGKLEARGLATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLES
RALMMSTNNILSPANGEPIIVPSQDVVLGLYWMTRERVNDKGEGMFFTDIKEVSRAFYAK
QVGLQAKVKVRIDEVEVGEDGEKHKTRTVYDTTVGRALLWNIVPDGLPFEFVNQPMKKKA
ISRVLNECYRKVGLKATVIFADQLMYTGFDFSTKSGSSIGVNDFEIPAAKADLIASAEAE
VKEIESQFASGLVTAGEKYNKVIDVWSRTNDKVTQAMMAGIKKEPVIDREGNETEQDSFN
SVYMYADSGARGSEAQIRQLAGMRGLMARPDGSIIENAITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEIDCGTDDGLTMAPVIEGGDVIESLGDRIL
GRVVARDVIKPGSDEIAVPAGTMIDEAWVERIEGMGIDEVIVRSAITCETAHGICAQCYG
RDLARGHRANPGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRASAADSIQVKQPGTVRL
HNVKTVKAESGNLIAVSRSGELAVADPSGRERERYKLPYGANISVYEGAEVEGGQIVAKW
DPHTHPIITEVAGWVKLSGMEDGLSIRKQTDEITGLSSIEIIDPAERPAAGKDLRPAVTL
VDENGEELTLASSNAPAHYALPPRAILSLAENNKVNVGDVIARIPQESGKTKDITGGLPR
VADLFEARKPKEPSILAEISGTVSFGKETKGKIRLQITPRDGKPLANGKDHYEVLIPKHR
QLTVFEGETVEKGEVISDGPSNPHDILRLKGVEELARYITNEIQEVYRLQGVGINDKHIE
TIVRQMLRKVEILEMGDSEFIKGDQVEYQRVVEENERLRAEGKQPAQFERLLLGITKASL
ATESFLSAASFQETTRVLTEAAVTGKEDSLRGLKENVVVGRLIPAGTGLAYHAERKRKRQ
QQVSLSYGEGPSAEEVEAALTEALKSSGE
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttgttaaacctggtgaaagcccaggatcagctggaagaatttgacgctatc
cgtatcggtctggcatccccggacatgatccgctcctggtcctacggcgaagtgaaaaag
ccggagaccatcaactaccgtaccttcaagccggagcgtgaaggcctgttctgtgccaag
atttttggcccggtaaaggactacgagtgcctgtgcggtaagtacaagcgcatgaaacac
cgcggcatcatctgtgaaaaatgcggcgtggaagtgaccaaggccaaggtgcgccgtgag
cgcatgggccacatcgagctggcgagcccggtcgcgcatatctggttcctgaaatccctg
ccgtcccggatcggcctgctgctggatatgaccctgcgtgatatcgagcgtgtgctgtac
ttcgaaagctatgttgtgaccgatccgggtatgactaccctggagcgcggccagctgctg
aacgacgagcagtacttcgaagcgatggaagagttcgccgacgagttcgaagcgaaaatg
ggtgcggaagccatccaggagctgatgaacgacatcgacctgccccaggaaatccagcgc
ctgcgcgaagagatcccggccaccaattccgagaccaagatcaagaagctgtccaagcgt
ctgaaactgctggaagccttctacaaatctggcaacaagccggagtggatggtcatgcag
gcactgccggttctgccgccggacctgcgcccgctggtaccgctggacggtggccgcttt
gcgacctccgacctgaacgacctgtaccgccgcgtgatcaaccgtaacaaccgtctgaag
cgcctgcttgagctgaatgcgccggacattatcgtgcgcaacgaaaagcgcatgctgcag
gagtctgtggacgcgttgctggacaacggccgtcgcggtcgtgccatcaccggttccaac
aagcgcccgctgaaatccctggccgacatgatcaagggtaagcagggtcgtttccgtcag
aacctgctgggtaagcgcgtcgactactccggtcgttccgtgatcgtggtaggtccgacc
ctgcgcctgcaccagtgtggtctgccgaagaaaatggccctcgagctgttcaagccgttc
attttcggcaagctggaagcccgcggcctggccaccaccatcaaggcggccaagaaaatg
gtcgagcgcgaagaagctatcgtgtgggatatcctcgacgaggtgatccgcgagcacccg
gtactgctgaaccgtgcaccgaccctgcaccgtctgggtatccaggcgttcgagccggtg
ctgattgaaggtaaagcgattcagctgcacccgctggtgtgtgcggcgtacaacgccgac
ttcgacggtgaccagatggcggtacacgtgccgctgaccatcgaagcgcagctggaatcc
cgcgcgctgatgatgtccaccaacaacatcctgtcgcccgcgaacggcgagccgatcatc
gtaccgtcccaggacgtggtactgggtctgtactggatgacccgcgaacgcgtaaacgat
aaaggcgaaggcatgttcttcaccgatatcaaggaagtcagccgggccttctacgccaaa
caggttggcctgcaggcgaaggtgaaagtgcgtatcgacgaagtcgaggtgggtgaagac
ggcgagaagcacaaaacccgtaccgtatacgacaccactgttggccgcgcgctgctgtgg
aacatcgtaccggacggcctgcccttcgaattcgtcaaccagccgatgaagaagaaggcg
atctcccgcgtactgaacgagtgctaccgcaaggtgggcctgaaggcgaccgttatcttt
gctgaccagctgatgtataccggtttcgacttctccaccaaatccggttcctccattggt
gtgaacgacttcgaaatcccggcggccaaggccgacctgattgcctctgcggaagcggaa
gtgaaagaaattgagagccagtttgcttccggtctggtaaccgcgggtgagaaatacaac
aaggtcatcgatgtttggtcccgtaccaacgacaaggtgacccaggcgatgatggccggt
atcaagaaagagccggtgatcgatcgcgaaggcaacgaaaccgagcaggactccttcaac
tccgtatacatgtacgccgactccggcgcacggggttctgaagctcagatccgccagctc
gccggtatgcgtggtctgatggcgcgtccagacggctccattatcgagaacgccattact
gctaacttccgtgaaggtctgagcgtactgcagtacttcatttcgacccacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttacctgacccgccgtctg
gtggacgtggcccaggacgtggtgatcaccgaaatcgactgtggcaccgacgacggcctg
accatggcgccggtgatcgaaggcggtgacgtgatcgaatctctgggtgaccgcatcctc
ggccgtgtcgtggcccgcgatgtgatcaagcccggcagcgacgagatcgccgtacccgcc
ggtaccatgatcgacgaagcctgggttgagcgcattgaaggtatgggtatcgacgaggtt
atcgtgcgttctgcgatcacctgtgaaaccgcccacggtatttgtgcccagtgttacggt
cgcgacctggctcgcggtcaccgcgccaacccgggtgaagccgtgggtgttgtggcagca
cagtccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gcgagtcgtgcgtctgcggcggacagcatccaggtgaagcagccgggtaccgtgcgtctg
cacaacgtgaagaccgtaaaagccgaaagcggcaacctgatcgcggtttcccgctctggt
gaactggcggtcgctgatccttccggtcgtgagcgtgagcgctacaagctgccctacggt
gccaatatcagcgtttacgaaggtgctgaagtcgaaggcggccagattgtggccaagtgg
gacccgcacactcacccgatcatcaccgaggtggccggttgggtgaaactgtctggtatg
gaagatggtctgtccatccgcaagcagaccgatgaaattaccggtctgtcttccatcgag
atcatcgatccggctgagcgtccggctgcgggtaaagacctgcgcccggcggtgaccctg
gtggatgagaatggtgaagagctgactctggcgagctccaacgcacctgcgcactacgcg
ctgccgccgcgggcgatcctgagcctggccgagaataacaaggtgaatgtcggtgatgtt
attgcccgtattcctcaggaatccggcaaaaccaaggacatcaccggtggtctgccgcgg
gttgccgacctgtttgaagcgcgtaaaccgaaagagccgtccatcctggcggaaatctcc
ggtaccgtttctttcggcaaggaaaccaagggcaagatccgtctgcagatcaccccgcgt
gacggcaagccgctggccaatggcaaggatcactacgaagtactgattccgaagcaccgt
cagctgaccgtgttcgaaggtgaaaccgtagagaagggcgaagtgatctccgatggtcct
tccaacccgcacgacatcctgcgccttaaaggtgtggaggagctggctcgctacatcacc
aacgagattcaggaggtttaccgcctccagggtgtaggtatcaacgacaagcacatcgag
accatcgtgcgtcagatgctgcgtaaagttgaaatccttgagatgggtgactctgagttc
atcaagggcgatcaggtggaataccagcgtgtggtggaagagaacgagcgtctgcgtgcc
gaaggcaagcagccggcgcagttcgaacgcctgctgctgggtatcaccaaggcgtccctg
gcgaccgagtccttcctgtctgcggcctccttccaggagaccacccgggtactgaccgaa
gccgcggtaaccggcaaggaagacagcctgcgtggcctgaaggaaaacgtggttgtggga
cgtctgatcccggccggtaccggtctcgcataccacgccgagcgcaagcgcaagcgtcag
cagcaggtgagcctgagttacggcgaggggccttctgccgaggaagtggaagcagcgttg
accgaagcgctgaagtcttccggcgagtaa
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