Microbulbifer bruguierae: PVT68_13695
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Entry
PVT68_13695 CDS
T09733
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mbrg
Microbulbifer bruguierae
Pathway
mbrg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mbrg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PVT68_13695 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbrg03021
]
PVT68_13695 (rpoD)
Transcription machinery [BR:
mbrg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PVT68_13695 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Pil1
TMPIT
Cwf_Cwc_15
Motif
Other DBs
NCBI-ProteinID:
WGL15819
UniProt:
A0ABY8NBN4
LinkDB
All DBs
Position
complement(3311398..3313275)
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AA seq
625 aa
AA seq
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MTDKTQQQKTTSRIRELIARGKEQGYLTYAEVNDHLPEDISDPDQVEDIIGMINDMGIKV
FESAPDAEELLMAEGDSSADEIAAAEAAAALAAVESDVGRTTDPVRMYMREMGTVELLTR
EGEIAIAKRIEEGLRELMAALAYWPGAVQQIINEYALIEKEERRIPDVIAGWLDPAEDVP
PGAQAGQAAEDTTSSDSNDDADSDSDDDDDDDSTTEEEENVGGIDPEELAERMNLLIAAQ
KNANAAIEKHGRDSKQAGEALEAVGEVFRFFKLAPRQFDPLYNEVRSILDNVREQERLVM
NLCIKKARMPRKTFIKEFPGNETNDDWIPSIIKKKRDYSDALRQVAEEIQRAQRKLTQAQ
DKAQLDIGQIKEINRRMSIGEARSRRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR
QMLQEMGREPTPEELGERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQNQ
ASPVDTATATGLHDATRSVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIR
QIEAKALRKLRHPSRSEHLRSFLDE
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaaaacccaacagcaaaagaccacctcacgcatccgtgaactgatcgcccgc
ggtaaagagcagggttatctcacctatgccgaggtgaatgaccatctcccggaggacatt
tccgatccggatcaggtggaagacatcatcggcatgatcaacgacatgggtatcaaggtg
ttcgaaagcgcaccggatgccgaagagttgttgatggccgaaggcgacagctccgccgat
gagatcgccgctgccgaagccgccgccgcgctggcagcggtagaatccgacgtgggccgc
accaccgaccctgtgcgcatgtatatgcgcgaaatgggtaccgtggaactgctgacccgc
gagggcgaaatcgccatcgccaagcgtatcgaagagggcctgcgcgaactgatggccgca
ctggcttactggccgggtgcggtgcagcagatcatcaatgaatatgcgctgatcgagaaa
gaagagcgccgtattcccgatgtaatcgccggctggctcgaccccgccgaagacgtcccc
ccgggcgcccaggctggccaggccgcggaagacaccaccagcagcgatagcaacgacgac
gccgattctgacagcgatgacgacgatgacgacgactccaccacggaagaagaggagaac
gtcggcggcatcgatccggaagaacttgccgaacgcatgaatctgctgattgccgcgcag
aaaaatgcgaacgccgcgatcgaaaagcacggccgtgactccaaacaggccggtgaagcg
ctggaggcggtgggtgaagtcttccgtttcttcaagctggcgccccgtcagttcgacccg
ctgtacaacgaagtacgcagtattctcgacaatgtgcgcgagcaagagcgcctggtcatg
aacctgtgtatcaagaaagcgagaatgccgcgcaaaacctttatcaaggaattccccggc
aacgagaccaacgatgactggatcccgtccatcatcaagaaaaagcgcgattactccgac
gccctgcgccaagtcgcggaagagatccagcgcgcccagcgcaaactgactcaggcccag
gacaaggcccagctggacatcggccagatcaaagagatcaaccgccgcatgtccatcggt
gaggcccgctcccgtcgcgccaagaaggaaatggtcgaggccaacctgcgtctggtgatc
tccatcgccaagaagtacaccaaccgtggcctgcagttcctggacctgatccaggagggc
aacatcggtctgatgaaggcggtggacaagttcgaataccgtcgcggctacaagttctcg
acttacgccacctggtggattcgtcaggccattacccgctccatcgccgaccaggcgcgc
accatccgtattccggtgcacatgattgagaccatcaacaagctcaatcgcatcagccgc
cagatgctgcaggaaatgggccgcgaacccacgccggaagagctgggcgagcgtatggac
atgccggaagacaaggtgcgcaaggtactgaaaatcgccaaggagccgatctccatggag
acgccgatcggcgacgatgaagactcccatctgggcgacttcatcgaggaccagaaccag
gcctccccggtggataccgccaccgccaccggtttgcacgacgctacccgctccgtgctg
gccggcctgacggcgcgggaagccaaggtactgcgcatgcgctttggtatcgacatgaac
actgaccacacccttgaggaagtgggcaagcagttcgacgttacccgcgagcgtatccgc
cagatcgaagccaaggcgttgcgcaaactgcgccacccttcgcgctccgaacacctgcgc
agcttcctcgacgagtaa
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