Microbulbifer bruguierae: PVT68_15630
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Entry
PVT68_15630 CDS
T09733
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mbrg
Microbulbifer bruguierae
Pathway
mbrg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbrg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVT68_15630 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbrg03019
]
PVT68_15630 (rnr)
03016 Transfer RNA biogenesis [BR:
mbrg03016
]
PVT68_15630 (rnr)
Enzymes [BR:
mbrg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PVT68_15630 (rnr)
Messenger RNA biogenesis [BR:
mbrg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PVT68_15630 (rnr)
Transfer RNA biogenesis [BR:
mbrg03016
]
Prokaryotic type
tRNA degradation factors
PVT68_15630 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
WGL16190
UniProt:
A0ABY8NCL7
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All DBs
Position
complement(3788553..3790826)
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AA seq
757 aa
AA seq
DB search
MSKSPIAAFNPLDAEKYSNPIPAREFIMSLLEKNKKKLDREQLANALHLSSDEEKEALRR
RLRAMERDGQILFEHRKGYSLVKQEDLLIGRVIGHPDGFGFLSSDASEEDLFLSDNEMLT
VFDGDRVQARISGTDRRGRKTGAIVKVLERNTSHLVGRLQLEDDHYFLKPENTRIAHEID
LDRDQLMGAKPGQYVSVKIIDFPNRRYNAFGRVTELLGDAMGPGMEIDVAIRSHDIPHHW
PKDTLRSAKQLGHKVPEADKLHRADLRDLPFVTIDGDDAKDFDDAVYCEKEASGRWRLFV
AIADVSHYVAPGSALDQEAQKRATSVYFPGRVVPMLPESLSNGLCSLNPQVDRLVMVCEM
TFSKTGKMTAYTFSEGVIHSHARLTYNQVNAFITAPDSGLGRQTARKLKDTAPHIHALHG
LYAVLKKTRAKRGAMDFERPEVQFEFTEDRKIERIVPVVRNDAHKMIEEFMLSANVATAD
FLKRQKMPTLYRVHDGPRDKKLTSLRAFLNDKGLKLGGGSKPSTAHYDQLLSNIGQRADA
QTIRTMMLRSLSQAEYSPDNRGHFGLAYSAYAHFTSPIRRYPDLLVHRAIRSVIRREKQR
NPLRRALSYVFGASSAPVQRFEHAAPLAPGKSYPYDKPAMQTLGAHCSNASRRADKASWD
VEAWLKCEFMQEFIGETFYGFVGSVTPFGLFIELEDLQVEGLIHISALKNDFYNFDAATQ
RLVGERDNTSFAIGDAVEVRVAAVDMERRKIEFTLAK
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatctccaatagctgcgtttaatccgctggacgccgaaaaatacagcaaccca
attcccgcgcgcgagttcattatgagcttgctcgaaaaaaacaaaaaaaagcttgatcgg
gagcagctggcgaatgccctgcacctgtcctctgacgaagagaaagaggctctgcgccgc
cgactgcgcgcaatggaacgcgacgggcaaattcttttcgagcaccgcaaaggctacagt
ctggtcaaacaggaagacctgttgattgggcgcgtgatcggacatccggacggcttcggg
tttctgagcagtgacgcatccgaagaagatctgtttttatccgataacgaaatgctgacc
gtatttgacggcgatcgcgtgcaggctcgaatcagtggcaccgaccgccgcggccgcaaa
accggtgctatcgtgaaggtcctcgagcgcaacaccagccacctggttggccgtctgcag
cttgaagatgaccactattttctcaagccggaaaacacccggattgcccacgagattgac
cttgatcgcgaccagttgatgggcgccaagccgggccagtatgtttccgtaaagatcatc
gactttcccaaccgtcgctacaacgcgttcggacgtgtgaccgaattactcggcgacgcg
atgggcccgggtatggagatcgatgtcgccatccgcagccacgatattccccaccattgg
ccgaaggacaccctgcgctcagcaaagcagctcggccataaagtgcccgaggcggacaaa
ctgcaccgtgcagacttgcgagatctgccgtttgtgaccatcgatggtgacgacgccaag
gatttcgacgatgcggtgtactgtgaaaaagaagcctctggccgctggcgtctgttcgta
gcgattgccgatgtctctcactacgttgccccgggcagcgcactcgaccaggaagcgcag
aagcgcgcaacatccgtgtattttcccggtcgtgtagtgccgatgctgccggaatccctc
tccaatggtttgtgttcgctcaatccacaggtagaccggctggtgatggtctgcgagatg
acattcagcaaaaccgggaaaatgaccgcttacaccttttccgaaggtgttattcactcc
catgcccggcttacctataaccaggtgaacgccttcatcacggcaccggattccggtctg
ggacggcagacggctcgtaaactcaaagacacggcgccacatattcacgcgctgcacggg
ctatacgcggttttgaagaagacccgtgcaaaacgcggtgcaatggattttgaaaggccg
gaagtacagttcgaattcaccgaagaccgcaagatcgagcggatagtcccggtagtccgc
aacgatgcgcacaagatgatcgaggagtttatgctgagcgccaatgtcgctaccgcagac
ttcctcaagcggcagaagatgccgaccctgtatcgcgtgcatgacggtccgcgagacaag
aagctgaccagcttgcgcgcattcctgaacgacaaagggctcaaactgggcggcggcagc
aagccttcgacggcgcattacgatcagctactgagtaatattggccagcgcgccgatgcg
cagaccatccgcaccatgatgctgcgatccctcagtcaggcggagtacagcccggataac
cgcggtcattttggcctggcgtattccgcgtatgcgcacttcacctcgcccattcgccgc
tacccggacctgctggtgcatcgagccattcgctcggtaatccgccgggaaaaacagcgc
aatccgctccgtcgggcactaagttatgtcttcggtgcgagcagtgcaccagtacagcga
ttcgagcacgcggcacccctcgcacccggaaaaagttacccctacgacaagccggccatg
cagacactcggggcacactgctccaacgcttcacgccgcgcggacaaagcgagctgggat
gtagaagcctggctgaagtgcgagtttatgcaggaatttatcggtgagacgttttatggc
tttgtcggcagcgttacgccctttggcctgtttatcgagcttgaagatcttcaggttgaa
ggtctgatacacatatccgcgctcaaaaacgatttttacaacttcgatgcagccacgcaa
cgtcttgttggcgagcgcgacaacaccagctttgccatcggcgatgccgtcgaagtgcgc
gtcgcggcggtcgatatggaacgacgtaaaatcgaatttacgctggccaaatag
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