Mycolicibacterium brumae: L2Z93_000947
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Entry
L2Z93_000947 CDS
T08531
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mbrm
Mycolicibacterium brumae
Pathway
mbrm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mbrm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L2Z93_000947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbrm03400
]
L2Z93_000947
Enzymes [BR:
mbrm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L2Z93_000947
DNA repair and recombination proteins [BR:
mbrm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L2Z93_000947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UWW07912
LinkDB
All DBs
Position
924504..926753
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AA seq
749 aa
AA seq
DB search
MGSQEPKVTLTNAEKVLYPETGADKAAVYRYYTTVAEVMLPHIAGRPATRKRWPNGVDHP
AFFEKQLASSAPAWLHRGSLNHRSGVTVYPIIDSVDALAWIAQQAALEVHVPQWRFVDTV
HGPATRLVFDLDPGEDVDMAQLATVARAVRAMLSDIGLTAYPVTSGSKGLHLYAPFAEPV
SSHGATVLAKRIAQQLESDMPSQVTAVMAKSQRAGKVFLDWSQNSGSKTTVAPYSLRGRP
TPTVAAPRTWDELDDPGLRQLRFDEVLERVARDGDLLEGLDSDIQGDRLSVYRSMRDGTR
TPEPVPQQPPTPGAGNSFVIHEHHARRLHFDFRLERDGVLVSWAIPKNLPMTPAVNHLAV
HTEDHPLEYGGFEGDIPKGEYGAGKVIIWDSGTYDTEKFRDDGEGGEVIVNLHGSKVTGR
YALIQTGGKNWLAHRTKDQPQPAPADLAPMLATPGSVAKLKAAQWAFEGKWDGHRMLVDA
DHGTVTLRSRTGRMVTAEFPQLRDLAADLTEHHVLLDGEVVALGDDGTPSLGALQNRTAA
TPIAFWAFDILYLDGRSLLKAKLRDRRKLLETLTQGTTLVVPPQLDGDGAQALEVSRDRG
WEGVIAKKWDSTYQPGRRSASWLKDKNWKTQDVVIGGWRVGDNGRAGRIGALLMGIPDDE
GLAYAGRVGTGFTEKDLSRLSELLDPLSAQENPFSTELTGPEAVGVTFVTPTLVGEVRYG
ERTADGRLRHSSWRGLRPDKPAAEVRYEG
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgggttcacaggagccgaaggtcacgctgaccaacgccgagaaggtgctgtatccggag
accggcgccgataaggccgcggtctaccgctattacacgaccgtcgccgaggtgatgctg
ccgcacatcgccggccggcccgccacccgcaaacgctggcccaacggcgtcgatcatccg
gcgttcttcgagaagcagctggcctcctcggcgccggcctggctgcatcgcgggtcgctg
aaccatcgcagcggtgtgacggtgtacccgatcatcgacagcgtcgacgcgctggcgtgg
atcgctcagcaggcagcgctggaagtccatgtgccgcaatggagattcgtcgacaccgtg
cacgggccggcgacccggctggtgttcgacctggacccgggcgaggacgtcgacatggcg
cagttggcgacggtcgcccgcgcggtgcgggcgatgttgtccgatatcggattgaccgcc
tacccggtgaccagcggcagcaagggcctgcacctctacgcgccgttcgccgaaccggtc
agctcacacggcgcgacggtgctggccaaacgcattgcccagcaattggaatccgatatg
ccgtcgcaggtcaccgcggtgatggccaagagtcagcgggccggcaaggtgttcctggac
tggagccagaacagcggatcgaaaaccaccgtcgcgccgtactcgctgcgcggtcggccc
accccgaccgtcgcggccccgcgcacctgggacgaactcgacgatccgggcctgcggcag
ttgcgtttcgacgaggtgctcgaacgcgtggcccgcgacggagacctgctggagggcctg
gacagcgacattcaaggcgaccggctcagcgtctaccgttccatgcgcgacgggacccgc
accccagaaccggttccgcagcagccacccaccccgggcgcggggaacagcttcgtcatc
cacgaacaccacgcccgccggctgcacttcgatttccggctggagcgcgacggggtgctg
gtgagctgggccatcccgaagaatctgccgatgaccccggcggtcaaccacctggcggtg
cacaccgaggaccacccgctggagtacggcggcttcgaaggcgacatccccaagggcgag
tacggcgccgggaaggtgatcatctgggactccggaacctatgacaccgagaagttccgc
gacgacggcgagggcggggaggtgatcgtcaacctgcacggctcgaaggtcaccgggcgc
tacgcgctgattcaaaccggcggcaagaactggctggcgcaccgcaccaaggaccagccg
caacccgcgcccgccgacctcgcgccgatgctcgccacccccggctcggtggccaaactc
aaagcggcacagtgggctttcgaaggcaagtgggacggccaccggatgctggtggacgcc
gaccacggcacggtgacattgcggtcgcgcaccggccggatggtcaccgccgaattcccc
cagctgcgggacctggccgccgacctgaccgagcaccacgtgctgctcgacggtgaggtg
gtggctctgggcgacgacgggacaccgtcgctgggcgcgctgcagaaccggaccgccgcg
acaccaatcgcgttctgggccttcgacattctctacctggacggacgatcgctgctgaaa
gcgaaactgcgggaccgccgaaagctgctggaaaccctgacccagggcacgactctggtt
gtgcccccgcaactcgacggggacggggcgcaggcgctggaggtgtcccgggaccgcggt
tgggaaggcgtcatcgccaagaagtgggattcgacgtatcagccgggccggcggtcggcg
tcctggctcaaggacaagaactggaagacccaggacgtggtgatcggtggctggcgggtg
ggcgacaacggccgggccgggcggatcggcgcgctgctgatgggcatcccggacgacgaa
ggactggcctacgccggacgggtgggcaccgggttcaccgagaaggacctgagccggctc
tccgaactgctggacccgctgagcgcccaggagaacccgttcagcaccgagctcaccgga
cccgaggcggtcggggtgacgttcgtgacgccgacgctggtcggggaggtgcgctacggc
gagcgcaccgccgatggccggttgcggcactccagctggcgcggcctgcgcccggacaaa
ccggccgccgaggtccgctacgaaggctga
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