Mycolicibacterium brumae: L2Z93_002473
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Entry
L2Z93_002473 CDS
T08531
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mbrm
Mycolicibacterium brumae
Pathway
mbrm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbrm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L2Z93_002473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbrm03019
]
L2Z93_002473
03009 Ribosome biogenesis [BR:
mbrm03009
]
L2Z93_002473
Enzymes [BR:
mbrm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L2Z93_002473
Messenger RNA biogenesis [BR:
mbrm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L2Z93_002473
Ribosome biogenesis [BR:
mbrm03009
]
Prokaryotic type
rRNA processing factors
L2Z93_002473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
UWW09377
LinkDB
All DBs
Position
complement(2550234..2553158)
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AA seq
974 aa
AA seq
DB search
MPERLRVHSLARVLGTTSRKVLDALAELDGRTRSAHSSVVRDEAVRVRDLLANAENALAG
FEGAPVPAPEPAEAEPVEAESGDEPESRLMLETPAVELPLFVAPEPIALPPVAKTADKPD
KDDVAEDAADSEDESGDSDDESGDDEQARPANRRRRRGRRGRGRGRGGDGESGDGDGAAD
GESSDGDGESADGDTDAAAETESDSEESGDADGENGAAEAGEGAANKRRRRRRRRKTGGG
GDDADTAPDDPPNTVVHERAPRRSGRGNNDPDEIQGISGSTRLEAKRQRRRDGRDAGRRR
PPILSEAEFLARREAVERKMVVRDKVRSEPPHEGARYTQIAVLEDGVVVEHFVTSAASAS
LVGNVYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGANRKIEQALKPGDH
VVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILREVVP
ADAGVIIRTASEGVKEEDIRADVSRLQERWTEIEAEAAKRKANAAGAAVALYEEPDVLVK
VIRDLFNEDFSELVVSGDAAWDTINGYVGAVAPELLTKLTKYQPSAPDGPDVFAVYRIDE
QLAKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVR
QLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQLTRKRL
GTGLIEAFSTTCSHCAGRGIVLHTDPVDSAQAPARKAENNRRGKRGKKPAAKPEENVVAK
IPPHPHGEHPMFRAMAAAGKHDDDEHAEGEVIESAEDAVDEAAVDAETVEQVAEETAEAD
LDAADLDEDSEDSDEEDSEDDDADEDDEVDVDLDADDEDEDDDLEVIDAEDDEDDDDDFD
ESDDADEDDDEEDDEEDEEDDDFDDDGDDEDDEDEDEDDSDEEEAEVIVAIAEPATTRRP
RRRAAARPAGPPAG
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
ctgccggagcggctgcgggtgcactccctggcccgcgtgctcggcaccaccagccgcaag
gtgctcgacgccctggccgaacttgacggccgcacccgcagcgcgcactcctcggtggtt
cgcgacgaagcggtccgggtccgcgacctgctggcaaacgccgagaacgcgctggccgga
ttcgagggcgcgccggttccggcgcccgagcccgccgaggccgagcccgttgaggccgag
tccggtgacgagcccgagtcgcgactgatgctggagacgccggcggtggagcttccgctg
ttcgtcgcccccgagcccatcgcgctgccgccggtggccaagaccgccgacaaacccgac
aaggacgatgtggcggaagacgccgcggactccgaggacgaatccggcgactccgacgac
gagtccggcgacgacgagcaggcccgcccggccaaccgtcgccgtcgccgcggccgccgc
ggtcgcggccgcggtcgcggtggagatggcgaatccggtgacggggacggcgccgccgac
ggcgaaagctccgacggggacggcgaatccgccgacggcgacaccgacgccgcggccgag
accgaatccgactccgaggaatccggcgacgccgacggcgagaacggcgccgccgaagcc
ggcgagggcgcggccaacaagcgccgccgccgccgtcgccgccgcaagaccgggggcggc
ggagatgacgccgacaccgcgccggacgatccgccgaacaccgtcgtgcacgagcgcgcc
ccgcgccggtccgggcggggaaacaatgatcccgacgaaatccagggcatctccggatcc
acccggctggaggccaagcgccagcgccgccgcgacggacgcgacgccggccggcgtcgc
ccgccgatcctgagcgaggccgagttcctggcccgccgcgaagccgtcgaacgcaagatg
gtcgtccgcgacaaggtccgcagcgagccaccgcacgagggcgcccgctacacccagatc
gcggtcctggaggacggcgtcgtcgtcgagcacttcgtgacctcggccgcatccgcttcg
ctggtcggcaacgtctatctgggcatcgtgcagaacgtgctgccgtcgatggaagcggcg
ttcgtcgacatcggccgcggccgcaacggcgtgctgtacgccggcgaggtcaactgggag
gccgccggcctgggtggcgcgaaccgcaagatcgagcaggcgctcaagcccggcgaccac
gtggtggtccaggtcagcaaggatcccgtcgggcacaagggcgcccggctgaccacccag
gtgtcgctggccggccgctacctggtctacgtgcccggcgcgtcgtccaccggcatcagc
cgcaagctgcccgacaccgagcgtcagcggcttaaggagatcctgcgcgaggtggtcccc
gccgacgccggcgtgatcatccgcaccgcctccgagggcgtcaaggaagaagacatccgc
gccgacgtcagccggctgcaggaacgctggaccgagatcgaggccgaggccgccaagcgc
aaggcgaatgccgcaggcgcggccgtcgcgctctacgaagagcccgacgtgctggtcaag
gtgatccgcgacttgttcaacgaggacttctccgagcttgtcgtctccggtgatgccgcc
tgggacaccatcaacggctacgtcggcgcggtggcgccggaactgctgacgaaactcacc
aagtaccagccctccgctccggacggccccgacgtgttcgccgtgtaccgcatcgatgag
cagttggccaaggcgatggaccgcaaggtgtggctgccctcgggcggcaccctggtgatc
gaccgcaccgaggcgatgaccgtcgtcgacgtcaacaccggcaagttcaccggcgccggg
ggcaacctcgaacagaccgtcaccaagaacaacctggaggcggccgaggagatcgtccgc
cagctgcggctgcgcgatatcggcggcatcgtggtgatcgacttcatcgacatggtgctg
gagtccaaccgggacctggtgttgcgcaggctcaccgaggcgctgggccgcgaccgcacc
cgccaccaggtctccgaggtcacctcgctggggctcgttcagctgacccgcaagcggctc
ggcaccggtctgatcgaagcgttctccaccacctgctcgcactgcgcgggtcgcggcatc
gtgctgcacaccgacccggtggactccgcgcaggcccccgcgcgcaaggccgagaacaac
cggcgcggcaagcggggcaagaagcccgcggcgaagccggaagagaacgtggtcgcgaag
atcccgccgcatccgcacggcgagcacccgatgttccgcgcgatggccgcggcgggcaag
cacgacgatgacgagcacgccgagggcgaggtcatcgagtcggccgaggacgccgtcgac
gaggctgcggtggacgccgagacggtcgagcaggtcgcggaggagaccgcggaggctgat
ctggacgccgctgacctcgacgaggactccgaggattccgacgaggaggactccgaggac
gacgacgccgatgaggacgacgaggtcgatgtcgacctggacgccgacgacgaagacgag
gacgacgacctcgaggtcatcgacgccgaagacgacgaagacgatgacgacgacttcgac
gagtccgacgacgcggatgaagacgacgacgaagaagacgacgaagaagacgaagaggac
gacgacttcgacgacgacggtgatgacgaagacgacgaggacgaagacgaggacgactcc
gacgaggaggaggccgaggtgatcgtcgccatcgccgaacccgccaccaccaggcgtccg
cgccgacgggcggccgctcgaccggccggtccgccggccgggtga
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