KEGG   Methylocystis bryophila: B1812_09840
Entry
B1812_09840       CDS       T04837                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
mbry  Methylocystis bryophila
Pathway
mbry03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mbry00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B1812_09840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mbry03021]
    B1812_09840
   03019 Messenger RNA biogenesis [BR:mbry03019]
    B1812_09840
Transcription machinery [BR:mbry03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     B1812_09840
Messenger RNA biogenesis [BR:mbry03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     B1812_09840
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 S1CSD-TOTE-2 AAA_25 NACHT ATPase_2 AAA Fungal_virus_P2_C PilZNR Spore_III_AA AAA_14
Other DBs
NCBI-ProteinID: ARN83537
UniProt: A0A1W6N130
LinkDB
Position
complement(2102518..2103786)
AA seq 422 aa
MREIKLSDLKAKSAAELLTFAEEHEVENASLLRKQELLFAILKQFAGREVEIVGEGVVEV
LQDGFGFLRSPDANYLAGPDDIYVSPSQIRKFGLRTGDTVEGMIRSPKEGERYFALLKVN
TINFEDPEKVRHKVPFDNLTPLYPNQRLKLEIEDPTRKELSSRVIDLVAPIGKGQRALVV
APPRTGKTVLLQNIAQSITTNHPECYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHRRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKVADKRVFPA
IDITRSGTRKEELLVPPDILKKTYVLRRILNPMGTVDAIEFLLGKLRETPKGNQAFFDSM
NT
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgcgggaaatcaagctttccgatctcaaagccaaaagcgccgccgaacttctgacattc
gccgaagaacacgaggtggagaacgcctcgctcctgcggaagcaggagctgctcttcgcg
attttgaagcaattcgcagggcgagaggtcgagatcgtcggcgagggcgtcgtcgaggtg
ctgcaggacggtttcggcttcctgcgctcgcccgacgccaattacctcgccgggcctgac
gacatttatgtctcgccttcgcagatccggaagttcggtcttcgcaccggcgacacggtc
gaaggcatgatccgcagccccaaggagggcgagcgatatttcgcgctgctcaaagtcaac
acgatcaattttgaggaccctgagaaggtgcgccacaaggtgcccttcgacaatctgacg
ccgctctatcccaatcagcggctgaagctcgagatcgaggatccgacgcgcaaggagctg
tcgtcccgcgtgatcgatctcgtcgcgccgatcggcaagggccaacgcgcgctcgtcgtc
gcgccgccgcgcaccggtaagaccgtgctgctgcaaaacatcgcgcaatcgatcacgacc
aatcaccccgaatgctatctgatcgtgctgctcatcgacgagcgtccggaggaagtgacg
gacatgcagcgctcggtgcgcggcgaggtcgtctcgtccaccttcgacgagccggcggtg
cgtcacgtgcaggtcgccgaaatggtgatcgagaaggcgaagcgcctcgtcgagcatcgc
cgggacgtggtgatcctgctcgactccatcacgcgtctcggccgcgcctacaacacggtc
gtgccgtcttcgggcaaggtgctgacgggcggcgtcgacgccaacgccctgcaaagaccc
aagcgcttcttcggcgcggcgcgcaacatcgaggagggcggctcgctcacgatcatcgcc
acggcgctgatcgacacgggctcgcgcatggacgaagtcatcttcgaagagttcaagggc
accggcaattcggagatcatcctcgaccgcaaggtcgcggacaagcgcgtgttcccggcg
atcgacatcacgcgttccggcacccgcaaggaagagctgctcgtcccgcccgacatcttg
aagaagacctatgtgctgcgccgcatcctcaatccgatgggcacggtcgacgcgatcgag
ttcctgctcggcaagctgcgcgagacgccgaagggcaatcaggccttcttcgattcgatg
aacacctga

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