Marinobacter sp. BSs20148: MRBBS_0013
Help
Entry
MRBBS_0013 CDS
T02323
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mbs
Marinobacter sp. BSs20148
Pathway
mbs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MRBBS_0013 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbs03400
]
MRBBS_0013 (recD)
Enzymes [BR:
mbs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
MRBBS_0013 (recD)
DNA repair and recombination proteins [BR:
mbs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MRBBS_0013 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
AAA_22
SH3_13
SLFN-g3_helicase
Helicase_RecD
UvrD-helicase
nSTAND3
AAA_28
HerA_C
NTPase_1
CbiA
AAA_7
AAA_16
UvrD_C
TrwB_AAD_bind
zf-CCHC_5
T2SSE
DEAD
Motif
Other DBs
NCBI-ProteinID:
AFP28951
UniProt:
M1F694
LinkDB
All DBs
Position
complement(19055..21415)
Genome browser
AA seq
786 aa
AA seq
DB search
MSKTRNVDNQFAFDLDETAPVTASSRDNRLALQHTDALLEQLDAWQQAGWIRPLDVRFAQ
LIRDLSDEQGNTPAPLVLLLAALVSHQVGRGHVCVDLATLMADATTTLSLPPEEPTAVSS
QNKANPSSSAKAPIANSTNTNLGQTRPSDLLAQVSVQECLSALNDALAVSDGSHTTPLVL
SGTRLYLRRFWRYEQYIAAGIQQRLAQPSPLTDPLSPAAVTLSQALDVLFKPQGSLNSQS
ALNSQNPQSSVDYQKLACALAARNRFAVITGGPGTGKTTTVVNLLAALQSVAGESPEREG
GGGKKGRKYRIRLAAPTGKAAARLNQSIGGAVSRLPLAQLPGQVALADIPTKVTTLHRLL
GSRPNTRKFRHNRDNPLLVDILVIDEASMVDLDMMASVFDALPANAQLILLGDKDQLASV
DAGAVLGELCQRAPDGHYLPATVQWLKAITGTDIPAVLQDSNGQPLDQAVAMLRKSYRFA
EGSGIRHLAEAVNTNTLDADTLQQARNATFEDVVWLNGRSKKPSLESTQALICGHSASGS
RQAFSNNAEGRRDVNGQPLPPPVGYRHYLTLMQDHNLDSNSTTGQWDQLAKSVLQAFSDF
QILCALRRGPWGVEGLNDLIAHHLLAQRLIPRAEGWYTGRPVLVTGNDYNLGLMNGDVGI
TFSVTSGMDAVTDRQSDDEKTQTVLRVAFPASDGSGDIRWISPSRLQQLETVYAMTVHKS
QGSEFNHTCLILPDRLSPVLTRELIYTGITRAKNWFSLITGDASVFSDSVGQRVVRTSGL
GAVLEE
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaactcggaacgtcgacaaccagtttgcctttgatttggacgagacggcaccc
gttaccgccagctcccgtgacaacaggcttgcccttcagcacaccgatgctctgctagaa
caactggacgcatggcagcaagccggctggattcgcccgctggacgtgcgctttgcgcag
ctgatccgggatttatcagacgaacaagggaacacaccggcacccctggttttactgctt
gccgcactggtatcccatcaagtgggccgcggccacgtgtgcgtggaccttgcaactctg
atggctgatgccacaacaacattgtcactgccgccggaagagccaacggcagttagcagc
cagaacaaggcaaacccgtccagctccgctaaagcgcctatcgcaaattcgacaaatacc
aacctgggccaaacccggccaagtgatctgttggcacaggtgtccgtgcaggagtgctta
agcgcactaaacgatgcgttagcggtcagtgatggctcgcacaccacgccgctggtgctg
agtggaacccggctgtatctgcgccgcttctggcgctacgaacagtacattgctgccggc
attcagcagcgactggcgcagccatcccctctgactgacccgctatcgcccgcagcagtt
actttaagccaggcgctggacgtgctgtttaaaccccagggctctttaaattctcaaagc
gctttaaactcgcaaaatccccaaagctctgtcgattaccaaaagctggcctgtgccttg
gccgctcgcaaccgctttgcggtgattaccggcggccccggcaccggcaaaactaccacg
gtggtcaacctgcttgcggccttgcagtccgtcgcaggcgagtcaccagagcgggaagga
gggggcgggaagaaaggtagaaagtaccgcattcgcctggccgcgccgacaggcaaagcc
gcggcgcgactgaaccaatccatcggcggcgctgtcagccggctgcccttggcacaattg
ccagggcaggtcgcattggcggatatacccaccaaagtaaccaccctgcaccggctgctt
ggcagccgtccaaacactcgcaaattccgccacaaccgcgataaccccctgttggtggat
attctggtgattgacgaagcctccatggtggatctggatatgatggcgtcggtattcgat
gcactgccggctaacgctcaactgattctgttaggtgacaaagatcagctagcctcggta
gacgccggtgcggtgctgggcgaactgtgccagcgcgcgccagacgggcattatctgcca
gcgacagtgcagtggctgaaagccatcactggcaccgacattccagcggtcttgcaggat
tcaaacggccagcccctggaccaggcggtggccatgctgcgtaagagttaccgctttgcc
gaaggcagcggcattcgccatctggccgaagcggtcaacaccaacacactggacgccgac
accctgcagcaggcccgcaatgcaacttttgaggatgtggtgtggctcaatggccgcagc
aagaagccctctctggagagcactcaggcgctgatctgtggccattcggccagtggtagc
cggcaagcgttcagcaataacgcggaagggcgaagggatgttaacggccaaccccttccg
ccaccggtgggttaccgccactacttaacgctgatgcaggatcacaatctggacagcaac
agcacaaccgggcagtgggaccaactggccaaatcggtgttgcaagctttcagtgatttt
caaatactctgcgccctacgccgcgggccctggggcgtggaagggctgaacgacctgatc
gcccatcacctgctggcgcaacggctgattccgcgcgccgagggctggtacaccgggcgg
ccggtgctggttaccggtaacgattacaatctggggctgatgaacggcgacgtcggcatt
accttcagcgttacctcgggcatggacgcggtcacggaccggcaaagcgatgacgagaaa
acacagacagtgttacgcgtggcctttcccgccagtgatggcagcggcgacattcgctgg
atttcacccagccggctgcaacagctggaaaccgtgtacgccatgacagtacacaaatcc
cagggttcggagttcaatcacacctgtttgatactaccagaccgtttaagcccggttttg
acacgagagctgatttacaccggcattacccgggcaaaaaactggtttagtttgataacc
ggcgacgccagcgttttcagcgacagcgtggggcagcgtgtggtgcggacatccggactg
ggtgcggtgcttgaagagtaa
DBGET
integrated database retrieval system
