Marinobacter sp. BSs20148: MRBBS_0794
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Entry
MRBBS_0794 CDS
T02323
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mbs
Marinobacter sp. BSs20148
Pathway
mbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MRBBS_0794 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbs03019
]
MRBBS_0794 (deaD)
03009 Ribosome biogenesis [BR:
mbs03009
]
MRBBS_0794 (deaD)
Enzymes [BR:
mbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MRBBS_0794 (deaD)
Messenger RNA biogenesis [BR:
mbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MRBBS_0794 (deaD)
Ribosome biogenesis [BR:
mbs03009
]
Prokaryotic type
rRNA helicases
MRBBS_0794 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
AAA_19
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFP29732
UniProt:
M1FCJ9
LinkDB
All DBs
Position
complement(841642..843156)
Genome browser
AA seq
504 aa
AA seq
DB search
MSELSFAELGLDPAVLEAVTAVGYETPTPIQAQAIPALLSGRHLLGVAQTGTGKTAAFAL
PLLSRVDPSVNAPQILVLAPTRELAIQVAEAFSTYASKLPNFHVLPIYGGQDFFPQIKGL
RRGAHVIVGTPGRMLDHLRKGTLKLDNLKALVLDEADEMLRMGFIDDVEAILSKTPDNCQ
RALFSATMPPQIKKVAQTYLKDAVEVRIESASRTVDAISQYVLPVYAERKLDALTRILEV
EPFDASIIFVRTKAETIVLAEKLAARGHAAAPLNGDLNQRQREQTVEDLKRGKKDIVVAT
DVAARGLDVPRITHVINYDVPYDTEAYIHRIGRTGRAGRDGKAILLVTPRERSWLRTLER
ATNATMEAYELPSPAALQKMRVDQFESQLIGFAEDRKLSKAMAMLDDIAERNEMDITMVA
GALACMLEATQPGSLPLEQPEALPAVSTTQPNRDRKAGRPGEFRKGPKPGSYNKRPSGGA
PGGKGKFAGKPAGKRPPRQSDAMR
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaattgtcttttgccgaactggggcttgatcctgccgttcttgaagcggtgacc
gccgttggctatgaaacccccacaccaatacaggcgcaagctatccctgcgctattgtcc
ggccgccatttactgggtgtagcccagaccggcaccggtaaaaccgccgccttcgctttg
ccactgctgagccgggtggacccaagcgtcaacgcgccgcagattctggttctagcacct
acccgcgaactggccattcaggtagcagaggcattttctacctatgccagcaagctccct
aattttcatgtgctgccaatttatggcggtcaagactttttcccgcagataaaaggcttg
cgccgtggagcccacgttattgttggcactcctggccggatgctggaccacctgcgcaaa
ggcacgttgaagctggataacttgaaagccttggtgctggacgaagccgacgaaatgcta
cgcatgggctttattgacgacgttgaagcgattctgtcgaaaaccccggacaactgccag
cgcgcactgttctcggccactatgccgccgcaaatcaagaaggttgctcagacctatctg
aaagatgcggttgaagtacgtatcgaaagcgcaagccgcacggttgacgctatctcccag
tacgtgctgccggtgtacgctgagcgcaagcttgatgccctgacccgcattctggaagtg
gaaccgtttgacgcgtcaattatctttgtgcgcaccaaggccgaaaccatcgtgttggcg
gaaaagctggcggctcgcggccacgctgcagcgcccttgaacggcgatctgaatcaacga
cagcgcgagcagacagttgaagacctgaagcgtggcaagaaagacatcgttgtagccaca
gacgttgctgcccgtggtctggacgtgccgcgtatcacacacgtgatcaactacgacgta
ccttacgacaccgaagcgtatattcaccgcattggtcgtactggccgtgccggtcgtgat
ggtaaagctattttgttggtaacgccccgggagcgtagctggctgcgcacgctggagcgc
gctaccaatgcgaccatggaagcctatgagttgccctcgccggcggcgctgcaaaaaatg
cgcgtagatcagtttgaaagccaactgataggttttgcggaagatcgcaaactgagcaaa
gcaatggcgatgctagacgatattgccgagcgcaacgagatggacattacgatggttgca
ggcgctttggcgtgcatgctggaagccactcaaccaggttcgttgccgctggagcagccg
gaagctctgccagcggtatcaaccacgcagccaaatcgtgaccgcaaagccggtcgccct
ggcgagttccgcaagggcccgaagccaggtagctacaataaacgcccgagtggcggtgcg
ccaggcggcaaaggcaagtttgccggcaagcccgctggcaaacgcccgccgcgtcagtct
gacgccatgcgctga
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