Marinobacter sp. BSs20148: MRBBS_3291
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Entry
MRBBS_3291 CDS
T02323
Symbol
cho
Name
(GenBank) Excinuclease cho
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
mbs
Marinobacter sp. BSs20148
Pathway
mbs03030
DNA replication
mbs03430
Mismatch repair
mbs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MRBBS_3291 (cho)
03430 Mismatch repair
MRBBS_3291 (cho)
03440 Homologous recombination
MRBBS_3291 (cho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mbs03032
]
MRBBS_3291 (cho)
03400 DNA repair and recombination proteins [BR:
mbs03400
]
MRBBS_3291 (cho)
Enzymes [BR:
mbs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MRBBS_3291 (cho)
DNA replication proteins [BR:
mbs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MRBBS_3291 (cho)
DNA repair and recombination proteins [BR:
mbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MRBBS_3291 (cho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
GIY_YIG_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
AFP32227
LinkDB
All DBs
Position
complement(3447154..3448605)
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AA seq
483 aa
AA seq
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MPQPSRHLKTTTFAFLDLETTGGSAATDRITEIGIQFWRAGECVDQWQTLVNPKTRISPF
IEQLTGISNAMVADAPLFEDIADELEQRLDGVVFVAHNARFDYGFVKGEFRRLGRMFVAK
VLCTVKLSRRLYPEFRRHNMDALIERHGLQQVQRHRAMGDVAAMLGFFEHVLAQQGEDTL
ETAIGELLQRPSIPSHLPLDTLQELPRGPGVYRFYGENDALLYVGKSTNIAQRVASHFSG
DHNSTRGVRISESLRRVDWTETAGELGALLLELKQIKGLKPLFNRRSRAAKNLVSIELTT
NAQGYLQARLIREIDPGRLGDYYGLFRSKRDAERALAGIAAKNELCNRLLGLESEHSGPC
FQRALGRCQGACEGREDPLRYNLRMQIAFYSLRLQTWPWKGPVAIIECNETSHKTDVLVV
YNWVHVATVHDDHELDSLSLGGQAVNFDLDSYKLLAKALLGKDRGQFRIQLLPALAQPDV
LMP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgccccaaccatcacggcacctgaaaaccaccaccttcgcctttctggaccttgaaacc
accggcggcagcgcggcaaccgatcgcatcactgaaatcggcatccagttctggcgagca
ggtgaatgtgtggaccagtggcaaaccctggttaatccgaaaacccgcatttcacccttt
attgaacagttgactggcatttccaatgccatggtggcggatgcccctctgtttgaggat
attgctgacgagctggagcaacgcctggacggggtggtttttgtggcccataacgcgcgc
ttcgattacggttttgtgaaaggagaatttcgccggctggggcgaatgtttgtggccaaa
gtgttgtgtacggtgaagctgtcgcgccggctatacccggagtttcggcgccataatatg
gacgcgctgattgagcgccatggtctgcagcaggtgcagcgccaccgagcgatgggagac
gttgctgccatgctcgggttttttgagcatgtgttggctcagcaaggcgaagacacgttg
gaaaccgccataggcgagttgctacagcggccgagcattccctcccacctgcctttagac
acattgcaggaattgcctcgcgggcccggtgtttataggttttacggtgagaacgatgcg
ctcttgtacgtgggcaaaagcaccaacatcgcgcagcgggtggcctcgcacttttccggc
gatcacaattcgactcgcggcgtgcgaatttccgaaagtctgcgccgtgttgactggacc
gaaaccgccggcgagttgggggcgttgttgctggagttgaagcagatcaaaggtctgaag
ccgttgttcaaccgacgctcgcgggcggctaagaatctggtgagcatagagttgaccaca
aacgcccaaggctatctgcaggcgcggctgatacgggaaatagaccccggcaggctgggc
gactattacggtttgtttcgcagcaaacgcgacgccgagcgggcgctagcgggtattgct
gcaaaaaatgagctgtgcaatcgcctgttaggcctggaatccgagcacagcggcccctgt
tttcagcgtgcgcttggccgctgccagggtgcctgtgaaggccgcgaagatcctctgcgt
tataatttgcgtatgcaaattgcattttacagcctgcgcctgcaaacctggccatggaaa
gggccggtggcgattatcgagtgtaacgaaactagccataaaaccgacgtactggtggtg
tacaactgggtgcacgttgccaccgttcacgatgaccacgaactggactcgctgtcgctg
ggcggccaggcggtcaattttgacctggattcgtacaaacttctggctaaggccctgctg
ggcaaagacagaggacaattccgtatacaactactgccggctttagcgcagcctgatgtg
ctaatgccgtaa
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