Methanococcoides burtonii: Mbur_0198
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Entry
Mbur_0198 CDS
T00341
Symbol
rrp4
Name
(GenBank) Archaeal exosome complex RNA-binding protein 4
KO
K03679
exosome complex component RRP4
Organism
mbu
Methanococcoides burtonii
Pathway
mbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mbur_0198 (rrp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbu03019
]
Mbur_0198 (rrp4)
Messenger RNA biogenesis [BR:
mbu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Mbur_0198 (rrp4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Mbur_0198 (rrp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
KH_6
ECR1_N_2
RRP4_S1
KH_1
RRP40_S1
KH_2
S1
DUF759
Motif
Other DBs
NCBI-ProteinID:
ABE51208
UniProt:
Q12ZB8
LinkDB
All DBs
Position
180357..181148
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AA seq
263 aa
AA seq
DB search
MDRKIVIPGQLLSEKKEMAGPGTYVKNGNIYSLLYGIANFKGRVSVVPFSGKYIPSRKDF
IIVNVIDVTPSNWIMETGSPYDGLLHVSEFPKRVDSSEMRKFMDVGDCVIVRVKDVSKAM
KVELSMREQGSRALSKGRIIEVVPSKVPRVIGHGGSMVSILKKESNCDVFVGKNGRIWIN
GKDKDMDRLTTAIEMIESESHMSGLTDKVGMFLRGEPEGTEGSDEEQLVDEEVAGVSLED
DDVTEETSRKVDVLLDNDTDETN
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtaaaatcgtaatccccgggcaattactttctgagaagaaagaaatggccggg
ccaggtacttatgttaaaaatggaaatatctattctttactttatggaattgcaaatttc
aagggaagggtttcagtagtacctttttcaggaaaatatattccctcacgtaaggatttc
attattgtgaatgtcattgatgtcactccttccaactggataatggaaaccggttctccg
tatgatggtcttcttcatgtatccgaatttcctaaacgtgtcgattcttctgaaatgagg
aagttcatggatgtcggggattgtgtcattgttcgtgtgaaggatgttagcaaggctatg
aaagtagagctttcaatgcgtgagcagggctcaagagcattaagtaaaggtcgtatcatt
gaagttgtgccttcaaaggtaccacgtgtcatcggacatggtgggtcaatggtatcaatt
cttaagaaagagtcgaattgtgatgtgttcgtaggaaagaacggccgtatctggataaat
ggtaaggataaagatatggaccgtcttacgacagcgatcgaaatgatagaaagtgaatct
catatgtccggtttaacggataaggtcggcatgtttttgaggggtgaaccggaagggacc
gagggttccgatgaagaacagctagtagatgaagaagttgctggtgtgtcccttgaagat
gatgacgttaccgaagagaccagccgtaaggtcgatgtcttgctggacaatgataccgat
gagactaattaa
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