Methanococcoides burtonii: Mbur_0200
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Entry
Mbur_0200 CDS
T00341
Symbol
rrp42
Name
(GenBank) Archaeal exosome complex exoribonuclease
KO
K12589
exosome complex component RRP42
Organism
mbu
Methanococcoides burtonii
Pathway
mbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mbur_0200 (rrp42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbu03019
]
Mbur_0200 (rrp42)
Messenger RNA biogenesis [BR:
mbu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Mbur_0200 (rrp42)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Mbur_0200 (rrp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ABE51210
UniProt:
Q12ZB6
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All DBs
Position
182223..183002
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AA seq
259 aa
AA seq
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MSEAISRLKKDYLFNLALKGQREDGRGFDETRDLIIETNVIDKAEGSAKVLLGDTQVLVG
VKLQVGSPFADSADKGVIITSMELNPIASPNFEAGPPREKAIEMARVVDRGIRESGAIDL
NKLCITEGEEVWIVFIDVHVLNDSGNLLDAASLGAIAALMTATIPGEREGRGEDVKLPIR
EMPVSLSFIDIGGELVIDATNNEESVSDLRLTIVTNQDGSICAMQKSGPGTLSEENFLRS
VEKSREVGAKIREEYLLNI
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagctatatcaagacttaaaaaagattatttgtttaatctggctctcaagggt
cagcgtgaggatggccgtgggttcgatgaaacacgtgatctgataattgagaccaatgtt
atcgataaagcagaagggtctgcaaaggtcttgctgggtgatactcaggtattggttggt
gttaaacttcaggtgggttctcctttcgcggattccgctgacaagggcgtcattatcacg
agtatggagcttaatcctatcgcctcaccaaacttcgaagctggtccacctcgagagaaa
gctattgaaatggcacgtgtggtagaccgtggtatccgtgaatcaggcgcaattgattta
aacaagctgtgtattacggaaggagaagaggtctggatagtcttcatagatgttcatgtg
cttaacgacagtggtaatttactggatgctgcttcactcggtgctattgcagcacttatg
acagcaactattccgggagaacgcgaaggtcgcggagaggatgtaaaactgcctatccga
gaaatgcccgtctctctctcctttattgatattggaggggaacttgtcattgatgcaacc
aataatgaggaatcagttagtgatctgagactcactatagtgaccaatcaggatggttcg
atctgtgctatgcagaaaagtggtccaggtacgctctcagaagaaaacttcctgagatcc
gttgaaaaatcacgtgaggtcggagcgaaaatcagagaggaatacctcctcaacatctga
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