Mycobacterium burgundiense: MU0053_000896
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Entry
MU0053_000896 CDS
T10823
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mbug Mycobacterium burgundiense
Pathway
mbug03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mbug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MU0053_000896 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mbug03400
]
MU0053_000896 (mfd)
Enzymes [BR:
mbug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MU0053_000896 (mfd)
DNA repair and recombination proteins [BR:
mbug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MU0053_000896 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
LSDAT_prok
MFD_D3
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
CAJ1497387
LinkDB
All DBs
Position
1:959030..962710
Genome browser
AA seq
1226 aa
AA seq
DB search
MTAPGHPHVQTPIAGLTELALTAPTFVDLCARTAEKPAELKLVAPSSAQFLVAAALAKQG
PLLVVTATGREADDLTAELRGVFGDSVALFPSWETLPHERLSPGVETVGARMLMLRRLAF
PDDARLGPPLQVVVTTARSLLQPMVSGLATSEHTEPVLLSVGDEVGFEDTIARLSRMAYD
RVDMVGKRGEFAVRGGILDVFAPTAEHPVRIEFWGDEVSEMRMFSVADQRSITEIPVDFL
VAVPCRELMLTEDVKARAAELLKGKSAGTDAVASPATGSVGDMLAKLAEGIPVDGMEALM
PVLRPDDPALLTDQLAPGTPVLVCDPEKVRTRAGDLIKTGREFLEASWSVAAVGGDAPID
IEQLGGSGFRELAEVRAGARAGGHPWWTLSQLPDESAIELDVRPSPSARSQQSLEEIFAM
LRAHVVTGGRAAVVTPGAGTANRVVEQLGENDTPAALLESGQQPQPGVVGVLRGPLHDGL
VVPGAELVIITETDLTGNRVTATDGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGKFVEM
TERIVGGARREYLVLEYASAKRGGGSDRLYVPMDSLDQLSRYVGGQAPSLSRLGGSDWTN
TKTKARKAVREIATELVALYAKRQAAPGHAFAPDTPWQAEMEDAFGFTETVDQMTAITDV
KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLADQHLQTFTTR
MAGFPVTVKGLSRFTDAGESKAVLEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQ
RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP
HDDKQVAAALRRELLRDGQVFYIHNRVSTIDSAAAKVRALVPEARVVVGHGQMPEEQLER
TVEGFWNRDYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA
YFLYSPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF
DLYVRLVGEAVEAYRAVADGETVTGPVEPKEVRIDLPVDAHLPPEYIDSDRLRLEAYRRL
AAANDDAAVSAVVEELTDRYGEPPEPVLRLIAVARLRLLCRASGVTEVSATGAAGQTATL
RLAPLTLPDSAQLRLKRMYPGSNYRATTATVQVPIPRVGTGVAAPRIRDLELVQMVADLL
VALDGRPQGEVDITAGTGNGKKGPDR
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcaccctcatgtccagaccccgattgcggggctcaccgagttggcg
ttgacggcgccgacctttgtcgatctgtgcgcgcggacggcggagaagcccgccgagttg
aagctggttgccccgtccagcgcccagttcctggtggcggccgcgctggccaagcaggga
ccgctgctggtggtcaccgccacggggcgggaggccgatgacctgaccgccgagttgcgc
ggggtcttcggggactcggtggcgctgttcccgtcctgggagacgctgccgcacgaacgg
ctctcaccgggggtcgagactgtcggggcgcggatgctgatgctgcgccggctggccttc
cccgacgacgcgcggctgggcccgcccctgcaggtggtggtgacgacggcgcgttcgctg
ctgcagccgatggtcagcggcctcgcgacctcggagcacaccgaaccggtgctgctgtcc
gtcggcgacgaggtgggcttcgaggacacgattgcgcgcctgtcgcggatggcctacgac
cgcgtggacatggtcggcaagcgcggtgagttcgcggtgcgcggcggcatcctggacgtt
ttcgcgccgacggccgaacacccggtgcggatcgagttctggggcgacgaggtctccgag
atgcggatgttctcggtcgcggaccagcgttcgatcaccgagatcccggtcgatttcctg
gtggcggtgccgtgtcgggaactgatgctcaccgaggacgtcaaggcgcgcgcggccgaa
ctgttgaagggcaagtccgccggcaccgacgccgtggcgagcccggcgaccggcagcgtc
ggggacatgctggccaaactcgccgaaggcatcccggtcgacggcatggaggcgctgatg
ccggtgctgcggcccgatgacccggcgctgctgaccgatcagctggccccgggcaccccg
gtgctggtgtgcgatccggagaaggttcgcacccgcgcgggcgacctgatcaagaccggc
cgcgagttcctggaggcgtcctggtcggtggccgcggtcggtggggacgcgcccatcgac
atcgagcaactcggcggctcgggattccgcgaactcgccgaggtgcgcgccggagcccgc
gccggcggccatccgtggtggacgctgagccagctgcccgacgagtcggccatcgaactc
gacgtgcggccctccccgtcggcccgcagccaacagagtctcgaggagatcttcgcgatg
ctgcgcgcccacgtcgtcaccggcgggcgcgcggcggtcgtgacccccggggccggcacc
gccaaccgcgtcgtcgagcagctgggtgaaaacgacacgcccgcagcgttgttggagtcg
gggcagcagccccagccgggtgtcgtgggggtgctccgaggcccgctgcacgacgggctg
gtggtcccgggcgcggaattggtgatcatcaccgagaccgacctgaccggcaaccgggtc
accgcgaccgacggcaagcggctggcggccaagcgccgcaacaccgtggatccgttggcg
ctgaccgccggcgatctggtggtgcacgaccagcacggcatcggcaagttcgtcgagatg
accgaacgcattgtcggcggggcgcgccgggaatacctggtgctcgaatacgcctcggcc
aagcgcggcggtgggtcggaccggctgtatgtgccgatggattcgctggatcagctgtcc
cgctacgtcggtggccaggcgcccagcctgagtcggctcggcggcagcgactggacgaac
acgaagaccaaggcgcgcaaggccgttcgcgagatcgccaccgagctggtggcgttgtac
gccaaacgccaggccgcgcccggacacgcgttcgcgccggacaccccgtggcaggccgag
atggaggacgcgttcggcttcaccgagaccgtcgaccagatgaccgccatcaccgacgtc
aaggccgacatggaaaagccgatcccgatggaccgcgtcatctgcggcgacgtcgggtac
ggcaagaccgagatcgcggtgcgggcggcgttcaaggcgattcaggacggcaagcaggtc
gcggtgttggtgcccaccacgctgctggccgatcagcacctgcagaccttcaccacccgg
atggcgggcttcccggtgaccgtgaaggggttgtcgcgcttcaccgacgccggcgagtcc
aaggccgtgctcgagggcatggccgacgggtcggtcgacgtggtgatcggcacgcaccgc
ctgctgcagaccggggtgcgctggaaggacctcggcctggtggtcgtcgacgaggagcag
cggttcggcgtcgaacacaaggaacacatcaagagcctgcgcacccacgtcgacgtgctg
accatgagcgccaccccgatcccgcgcaccctggagatgagcctggccggcatccgcgag
atgtcgaccatcctgaccccgccggaggagcgctacccggtgctgacctacgtcggcccg
cacgacgacaagcaggtggccgcggcgctgcgccgggagttgctgcgtgacggtcaggtg
ttctacatccacaaccgggtcagcaccatcgactcggccgcggcgaaggtccgcgcgctg
gtgcccgaggcccgtgtcgtcgtcgggcacggtcagatgcccgaggagcagctggaacgg
accgtcgaggggttctggaaccgggactacgacatcctggtctgcaccacgatcgtcgaa
accgggttggacatctccaacgccaacaccctgatcgtggagcgggccgacaccttcggc
ctgtcccagctgcaccagttgcgcggccgggtgggacgcagccgggaacgcggctacgcc
tatttcctgtactcgcccgaggtgccgctgaccgagaccgcctacgaccggctggccacg
atcgcgcagaacaacgaactcggcgccgggatggccgtggccatgaaggacctggagatc
cggggcgccggcaacgtgttgggcgccgagcagtccggccatgtcgcgggtgtggggttc
gacctgtacgtgcggctggtcggcgaggccgtcgaggcctaccgcgccgtggccgacggc
gaaaccgtcacgggcccagtcgaacccaaggaagtccggatcgacctgcccgtcgatgcg
cacctgccgccggagtacatcgacagcgaccggctgcggctggaggcctaccgccggctg
gccgccgcgaacgacgacgccgcggtcagcgcggtcgtcgaggaactcaccgaccgctac
ggggagccgccggaaccggtgctgcggctgatcgcggtggcccggctgcggctgctgtgc
cgcgccagcggggtcaccgaggtgtcggcgaccggggccgccggccaaaccgcgaccctg
cggttggcgccgctgacgctgccggactcggctcagctgcggctcaagcgcatgtatccg
ggttcgaactatcgcgccaccaccgcgacggtgcaggtgccgattccgcgggtggggacc
ggtgtcgccgcaccgcgcatccgcgacctcgagttggtccagatggtcgccgatctgctg
gtggcattggatggccgaccgcagggcgaagttgatataacggcaggcacgggcaatggg
aagaagggaccggaccgatga
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