Mycobacterium burgundiense: MU0053_001642
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Entry
MU0053_001642 CDS
T10823
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mbug Mycobacterium burgundiense
Pathway
mbug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MU0053_001642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbug03019
]
MU0053_001642
03009 Ribosome biogenesis [BR:
mbug03009
]
MU0053_001642
Enzymes [BR:
mbug01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MU0053_001642
Messenger RNA biogenesis [BR:
mbug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MU0053_001642
Ribosome biogenesis [BR:
mbug03009
]
Prokaryotic type
rRNA processing factors
MU0053_001642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
CAJ1500323
LinkDB
All DBs
Position
1:1733645..1736545
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AA seq
966 aa
AA seq
DB search
MPEKLRVHSLARVLGTTSRRVLDALIEFDGRSRSAHSSVDRADAVRVRDLLAAADTAEPA
AASAPAAAVTPEPSAAVEPEIVAPEFAEPEAAAIADPTPPTEEPESRLLLETPEPAADAT
QVVADYLPLFVAPQPVPSRRVERSEPAGVDDADTDHDDHDDHDEQSDDSGDDSSDQDDAD
DQSERPTNRRRRRGRRGRGRGRGGESAGDSDDDDEHDGDKSDDDSEDDSSAEDDGSDDDN
SDDDSSDDDNGPSDGATRRRRRRRRRKSGSSDDSDNGSPDDPPNTVVHERAPRDRNKSDS
DEIQGISGSTRLEAKRQRRRDGRDAGRRRPPILSEAEFLARRESVERVMVVRDKVRTEAP
QPGSRYTQIAVLEDGVLVEHFVTSAGSASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGV
LYAGEVNWEAAGLGGANRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYV
PGASSTGISRKLPDTERQRLKEILREIVPPEAGVIIRTASEGVNEEGIRDDVTRLQERWT
QIEATAIETKKKAAGAAVPLYEEPDVLLKVIRDLFNEDFSNLVVAGDSAWNTINDYVNSV
APELLPKLTKYEGAEDGPDVFAVHRIDEQLVKAMDRKVWLPSGGTLVIDRTEAMTVVDVN
TGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGMIVIDFIDMVLEANRDLVLRRLT
EALARDRTRHQVSEVTSLGLVQLTRKKLGTGLIEAFSTTCTHCTGTGLVMHADPVDSAPA
AGSRRSDSGGGTGGGSSRRGRRGKKGRTEEVVPVVAKVPAHTAGEHPMFKAMAEKDEDED
DTKDQTSALDETDELDEDEPATDGVDVAAVTEDATGEDLEDDEDVEDVEDEIDLDDDESD
DDEFDDIELDDDDDDDDDDDSDEDDSEDDDSEDDDSDEDEDDDEVAARVGRPRRRRAAAR
PAGPPS
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
ctgcccgagaagttgagggtccactcgctggcccgggtgctcggcaccaccagccgccgc
gtcctcgacgcgctgatcgaattcgacggtcgctcccgcagcgcgcattccagcgtggac
cgggccgacgcggtccgggtgcgcgatctgctcgccgccgccgacaccgcggagccggcc
gcagcatcagcccccgccgccgccgtgaccccggagcccagcgcggccgtcgagcccgag
atcgtcgcacccgaattcgccgagcccgaggccgcggcgatcgcggatccgacgccgccg
accgaggaacccgagtcgcgactgctgctcgagacccccgaacccgccgccgacgccacg
caggtcgtcgccgactatctgccgcttttcgtggcgccgcagcccgtgccgtcgcgccgc
gtggagcgcagcgaacccgccggtgtggatgacgccgacacggaccacgacgaccacgac
gaccacgacgagcagtccgacgactccggtgacgactcgagcgaccaggatgacgccgac
gatcagtccgaacgtcccaccaatcggcgtcgccgccggggccggcgtggccgtggccgc
ggtcgcggtggtgagagcgccggggacagcgacgacgatgacgagcacgacggcgacaag
tccgacgacgactccgaggacgattccagcgccgaggacgacggctcggacgacgacaac
tccgacgacgacagctccgatgacgacaacggccccagcgacggcgccacccgccggcgc
cgccgtcgtcgccgccggaagtcgggatccagcgacgacagcgacaacggctcgcccgac
gatccgcccaacaccgtggtgcacgagcgtgcgccccgcgaccgcaacaagagcgactcc
gacgagatccagggcatcagcgggtccacgcggctggaggccaagcggcaacgccgtcgt
gacggccgggacgccggccgccgccgcccgccgatcctgtccgaggccgagttcctggcc
cggcgcgagtcggtcgaacgcgtcatggtggtccgcgacaaggtccgcaccgaggccccg
cagccggggagtcgctacacccagatcgcggtcctcgaagacggcgtcctcgtcgagcac
ttcgtcacctcggccggctccgcatcgctggtcggcaacatctatctcggcatcgtgcag
aacgtgctgccctcgatggaggcggcgttcgtcgacatcggccgcggccgcaacggcgtg
ctgtacgccggcgaggtcaactgggaggccgccggcctcggcggtgccaaccgcaagatc
gaacaggccctcaagcccggcgactatgtggtggtccaggtcagcaaggaccccgtcggc
cacaagggtgcccggctgaccacccaggtgtcgctggccggtcggtacctggtctacgtg
cccggggcatcgtcgaccggcatcagccgcaagctgcccgacaccgagcggcagcgactc
aaggagattctgcgcgagatcgtcccgccggaggccggtgtgatcatccgcaccgcctcc
gagggtgtcaacgaagagggcatccgcgacgacgtgactcggctgcaggaacgctggacg
cagatcgaggcgaccgcgatcgagaccaagaagaaggcggccggcgcggccgtcccgctc
tacgaagagcccgatgtcctgctgaaggtcatccgcgacctgttcaacgaggacttctcc
aatttggtcgtcgccggcgacagcgcctggaacacgatcaacgactatgtgaattcggtt
gccccggagctacttccgaagctgaccaagtatgagggtgccgaggacggccccgacgtg
ttcgccgtgcaccggatcgacgagcaactcgtcaaggcgatggaccgcaaggtgtggctg
ccctcgggcggcacgctggtcatcgaccgcaccgaggccatgaccgtcgtcgacgtcaac
accggcaagttcaccggcgcgggcggcaacctcgaacagaccgtgaccaagaacaacctc
gaggccgccgaggagatcgtgcggcaactgcggttgcgcgatatcggcggcatgatcgtc
atcgacttcatcgacatggtgctggaggccaaccgggatctggtgttgcgccggctgacc
gaggcgctggcccgggaccgcacgcgccaccaggtctccgaggtcacctcgctgggcctg
gtgcagctgacccgcaagaagctcggcaccggtctgatcgaggcattctcgacgacgtgt
acgcactgcaccggcaccggcctcgtgatgcacgccgacccggtcgattccgcaccggcg
gccggctcgcgccggtccgattccggcggcggcactggcggcggcagcagccgacgcggt
cgccgcggtaagaaggggcgcaccgaagaggtcgtgccggtggttgccaaggtgcccgcg
cacacggccggcgagcacccgatgttcaaggcgatggccgaaaaggacgaggacgaggac
gacaccaaggaccagacctcggccctcgacgagaccgacgaactcgacgaggacgagccg
gcgaccgacggtgtcgacgtcgcggcggtgaccgaagacgccaccggcgaggacctcgag
gacgacgaggatgtggaagacgtcgaggacgagatcgacctcgacgacgatgaatccgat
gacgacgagttcgacgacatcgaactcgacgatgacgatgatgatgatgatgacgacgac
tccgacgaggacgactccgaggacgacgactccgaggacgacgactccgacgaggacgag
gacgacgacgaggtggcggcccgggtcggccggccacgtcgacggcgcgcggcggcccgg
cctgcaggtccgccgagctga
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