Methylotuvimicrobium buryatense: EQU24_04850
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Entry
EQU24_04850 CDS
T05995
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mbur
Methylotuvimicrobium buryatense
Pathway
mbur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EQU24_04850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbur03019
]
EQU24_04850
03009 Ribosome biogenesis [BR:
mbur03009
]
EQU24_04850
Enzymes [BR:
mbur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EQU24_04850
Messenger RNA biogenesis [BR:
mbur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EQU24_04850
Ribosome biogenesis [BR:
mbur03009
]
Prokaryotic type
rRNA processing factors
EQU24_04850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QCW81649
UniProt:
A0A4P9UKA1
LinkDB
All DBs
Position
complement(1029746..1031935)
Genome browser
AA seq
729 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIITRIEPSLEAAFVNY
GSEKHGFLPFKEIAPNFRQRAEGDASEGGRASIKDQIKEGQEIVVQIEKEERGNKGAALT
TYISLAGTYLVLMPNNPKAGGISRRIEGDTRNELREVMTALEIPDTMGLIVRTAGCGKSA
EELQWDLNYLLQLWEAIERSASEHSAPFLIFQESNVIIRALRDHLRGNIDEILIDKEEAF
HLVQKFLKQVMPHFLSKAKLYQDSVPLFSRYQIESQIEIAYGREVSLPSGGSIVIDHTEA
LTSIDINSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMANKNQRA
VENRLRDALKIDRARIQTSRISRFGLLEMSRQRLRPSLGESTQLICPRCKGQGTIRNVES
VALAVLRVLEEEAMKPGTEKVIAHLPIESATFLLNEKRPAIELIESRLKVGIVILPSKHL
ETPAYTIDRIKAKDAVEEKPSYLQIKEEDIPLPEFAQQIKPKAEQAAIKEFLPDAPAPVQ
NRNTSASLVKRFWQKLIGGKDEAPPMPQPAKKQERKEGEERIPGKKRDNKRGPGSRNNRP
KGPADKREAKPAERQEIIPEEVAQQPVESDKTTNEAIEQPAKKPQSRNGRRGPNRRRPRN
PNYKKPDSSQQSEISGPNAPTQTDDGPKQVEPAKTQDDKPRRDREAAPAKPDNHNDSKPV
VKSESESDA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaatgccacgcaacctgaagaactgcgtgtcgctttggtagat
ggtcaaaaactttatgattttgacattgaagtcccttcaaaagaacaaaaaaagtcaaac
atttacaaaggcataattacccgtatcgaacccagcctagaagccgctttcgtgaattac
ggctccgaaaaacacggctttttaccgtttaaggaaattgctccgaacttcaggcagcgc
gccgaaggcgatgcatccgaaggcggacgcgcatctatcaaagatcaaatcaaggaaggc
caagaaatcgtcgttcaaatcgaaaaagaagaacgcggaaacaaaggcgcggcattaacc
acctacatcagcctcgccggaacctatttggtattgatgccgaacaacccgaaagccggc
ggtatttccaggcgcattgaaggcgatacgcgaaatgaattgcgtgaagtcatgacagcg
ctggagattcccgacactatgggcctgatcgtccgtacggccggatgcggcaaaagcgcc
gaggaactgcaatgggatttaaattatctgttacaactctgggaagcgatcgagcgttcg
gctagcgagcactcggcaccttttttgatattccaagaaagcaatgtcatcattagggcc
ttacgcgaccatctacgcggtaacatcgatgaaatcctgatagataaggaagaagcattt
cacctggtgcaaaagtttttgaaacaggtcatgccgcactttttgtccaaagcgaaactc
tatcaggattcggtacctttgtttagtcgctatcaaatcgaatcgcaaatcgaaatcgcc
tatggccgcgaagtatcgctgccatccggcggctcgatcgtgatcgatcataccgaagca
ttgacctcgatcgacattaactcggcacgcgcgaccaaaggcagcgacatcgaagaaacc
gctttaaacaccaatcttgaagccgccgatgaaatcgcgcgtcagttacggctccgcgat
ttgggcggtttgttcgtaatcgacttcatcgatatgatggccaataaaaatcaacgcgcg
gtcgaaaaccgtctgcgcgatgctttaaaaatcgatcgagcccgcatacaaaccagccgt
atttcgcgtttcggcttgcttgaaatgtccaggcaacggctgcgtccttcattgggcgaa
tcgacgcaattgatctgcccgcgctgcaaaggccaagggacgattcgtaatgtagaatcg
gttgcactggcagtgctgcgcgtactggaagaagaagcgatgaaacccggcaccgaaaaa
gtcatcgcgcatttaccgatcgaaagcgcgactttcctgctcaatgaaaagcggcccgct
atcgaattgatcgagtctcgattaaaagtcggcatcgtgattctaccgagcaaacacctg
gaaacgccggcttacacgatcgaccggatcaaggccaaggatgccgtcgaggaaaagcct
agctatctacaaatcaaggaagaagatattccgcttcctgaattcgcgcaacagatcaaa
cccaaagccgagcaagcggctattaaggaatttttacccgatgcaccggcgccggtacaa
aatcgtaatacctcggccagcctggttaagcgcttttggcaaaaattgatcggcggtaaa
gatgaagcgccacccatgccccaaccagccaaaaaacaggagcgcaaagaaggcgaagaa
agaatcccaggcaaaaaacgcgataataaacgcggaccgggaagccggaacaaccgacct
aaaggccccgccgataagcgtgaagcgaaacctgccgagcggcaagagattattcctgaa
gaagtcgctcaacaaccggttgagtcggacaaaaccacgaatgaagccatcgaacaaccg
gcaaaaaaaccgcaatccagaaatggaagaagaggtccgaatcgacgtcgccctagaaac
ccgaattacaaaaaaccggactcttcacaacagagcgaaatcagcggaccgaatgcgcca
actcaaaccgatgatggaccgaagcaggtagagcccgccaagacacaagacgataaacct
cgccgcgatcgggaagccgcccccgctaaaccggacaaccataacgacagcaaacccgtt
gttaaatccgaaagcgaatcggacgcctaa
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