Methanosarcina barkeri Wiesmoor: MSBRW_0035
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Entry
MSBRW_0035 CDS
T03839
Name
(GenBank) Replication factor A (ssDNA-binding protein)
KO
K07466
replication factor A1
Organism
mbw
Methanosarcina barkeri Wiesmoor
Pathway
mbw03030
DNA replication
mbw03420
Nucleotide excision repair
mbw03430
Mismatch repair
mbw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSBRW_0035
03420 Nucleotide excision repair
MSBRW_0035
03430 Mismatch repair
MSBRW_0035
03440 Homologous recombination
MSBRW_0035
03460 Fanconi anemia pathway
MSBRW_0035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mbw03000
]
MSBRW_0035
03032 DNA replication proteins [BR:
mbw03032
]
MSBRW_0035
03400 DNA repair and recombination proteins [BR:
mbw03400
]
MSBRW_0035
Transcription factors [BR:
mbw03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
MSBRW_0035
DNA replication proteins [BR:
mbw03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
MSBRW_0035
DNA repair and recombination proteins [BR:
mbw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
MSBRW_0035
MMR (mismatch excision repair)
MSBRW_0035
DSBR (double strand breaks repair)
HR (homologous recombination)
MSBRW_0035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
Ssb-like_OB
REPA_OB_2
OB_MEIOB_N
TriTu
POT1PC
RecG_wedge
DUF3127
BRCA-2_OB1
Motif
Other DBs
NCBI-ProteinID:
AKB49288
UniProt:
A0A0E3QHB8
LinkDB
All DBs
Position
complement(16134..17588)
Genome browser
AA seq
484 aa
AA seq
DB search
MTDIESIYKKLSHVISKEDFLQRVQEKVESMGGLCDEPMAAMLVANELGFSDVGRDSVKI
ENITAESGQINFVAKVVSVFDTKEFTRNDGTIGRVGNIIVGDETGKIRLTLWDNMADLIK
AGKIIAGQTLQISGYAKQGYSGVEVNVGNNGVLAESEEEIDVAANNQKIKDIKDGMGDLN
LTGKVLEISEVRTFQRKDGTSGKVGNLLLGDSTGTVRVTLWDDRTEFLNQIEYGDTVELV
NAYARENAFTQKVELQVGNRSIIKKSEKKVEYEEEFAPIEDIRADMNNINVSGRVLDIGE
IRTFEKKDGSPGRVGNLLLGDSTGKIRLTLWDEKTNFLDEVDFDETIEVLHAYSRENAFN
QQVELNLGNRGIIQKSEKEIEYREKFTDIADIIPGESYSVQGKVSEIGELREFEREDGTE
NVVANLQLKDETGSIRLTLWGEQAYVIEDLDIDSEIQIINAYAKYGLNEEIELSIGNRSR
VIML
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgacagatattgaatcaatttataaaaaacttagccatgttatcagtaaagaagacttc
ctgcaacgtgtacaggaaaaggtcgaaagcatgggagggctttgcgatgaacctatggct
gccatgctggttgccaacgaacttggattttcggatgtaggtcgggacagtgtaaagatt
gaaaacattacagctgagagcggacaaattaactttgttgcaaaggttgtgtcagttttc
gataccaaagaatttacccgaaacgacgggacgataggtagagtcggaaatataattgtt
ggagatgaaaccggaaagattaggctaacactctgggacaacatggcagatctcataaag
gctggaaaaatcatagcaggacaaaccctccagatcagcggctatgcgaaacagggatat
tcgggagtggaagtcaatgtaggaaataatggagtcctggccgagagtgaagaagaaatc
gatgtggctgccaacaaccagaaaataaaggatataaaagatggcatgggagacctgaat
ttgacaggaaaagtcctggaaatttcagaagtaaggaccttccagcgaaaagacggtacc
agcggaaaggtcggaaacctgcttcttggagacagtacaggcacagtcagggtgacccta
tgggacgacaggaccgagttcctaaaccagatagaatacggagacactgtggagctggtt
aatgcttatgcgcgagaaaatgcttttactcagaaagttgaattgcaggtgggaaaccga
agtataataaagaaaagtgaaaaaaaagtcgagtacgaagaggaatttgccccaattgaa
gatataagggctgatatgaacaatattaacgtttccggtagagtgctcgatataggggaa
atccggacctttgagaaaaaagatgggtctcccggaagagtaggaaatcttcttcttggc
gattccactggaaaaatcaggctaactctctgggatgaaaaaaccaactttctggatgaa
gttgattttgacgagaccatagaagtacttcatgcttattctcgggaaaatgccttcaac
cagcaggtggaactcaatctaggaaaccgggggataatccagaagagtgaaaaggagatt
gagtatagagaaaaatttacggatattgctgatattatccctggggaaagctattcggtc
caggggaaggtttccgaaataggggaactccgagagtttgaaagagaagatggaaccgag
aacgtggttgcaaatctccaattaaaagacgaaaccggcagcataaggttaactctctgg
ggagaacaggcttatgtgatcgaagatcttgatattgactccgaaatccagatcattaat
gcgtatgcgaagtatggcctgaatgaagaaatcgagctgagtattgggaaccgaagcaga
gtaattatgctttaa
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