Methanosarcina barkeri Wiesmoor: MSBRW_0648
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Entry
MSBRW_0648 CDS
T03839
Name
(GenBank) tRNA-intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
mbw
Methanosarcina barkeri Wiesmoor
Brite
KEGG Orthology (KO) [BR:
mbw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mbw03016
]
MSBRW_0648
Enzymes [BR:
mbw01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
MSBRW_0648
Transfer RNA biogenesis [BR:
mbw03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
MSBRW_0648
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Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
tRNA_int_end_N2
Motif
Other DBs
NCBI-ProteinID:
AKB49901
UniProt:
A0A0E3LKP9
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Position
complement(783276..784328)
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AA seq
350 aa
AA seq
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MKTQLKGDRVLAEKEAVAEFYKTGYFGRPKGEGLELSLVEAAFLLSRGKLEIELEGTMLD
FRYFFEQASLRQPNFELKYIVYKDLKERGYYVQPSAADFRVYPRGSHPGKSAARIFVHVQ
SERQLLPVKLLQDSVISAENVHKQFILAVVDEESDLTFYEVKTAVPKGEMTEPYPAIKTD
ATFLEDRVIAWDAQASETLYKRGFYGKMLDSERLQLSLVESLYLFSRGIITVRDRKGKVF
SFDEFIEKASEIESFFLRKYSAYKNLRDSGHVVKTGFKFGTNFRVYRKVESIEKIPHSEY
LVNAIPADFEFRLSVMSGAVRLANSVRKKMLFAVEKDEEIEYLDISRTKM
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacacaacttaaaggagaccgggtccttgccgaaaaggaagcggtagccgaattt
tataaaacaggttacttcgggcgtcctaaaggcgaagggcttgaactctcgcttgtagaa
gctgcttttcttctgtccagaggaaagctcgagatcgaactcgaaggcacaatgctcgat
ttcagatactttttcgaacaggcttctttgaggcagccgaattttgagctgaaatatata
gtttataaggaccttaaagaaagagggtattatgttcagccatcagctgcggatttccgg
gtatatcccagaggcagccacccaggtaaaagtgcagcaagaatttttgttcatgtccag
tctgaaaggcagctccttcccgtaaaacttcttcaggactcagttatctcggcagagaac
gtgcataagcagtttatccttgctgtggtggatgaagaaagtgaccttaccttctatgag
gttaaaaccgcagttcccaaaggagaaatgactgagccatatcctgccatcaaaaccgat
gctactttcctggaagacagggtaatagcctgggatgctcaggcttcggaaactctctat
aaaaggggtttttacggaaaaatgctggattccgagaggctgcaactttccctggtcgaa
tccctttacctcttttccagaggcataataacggttcgggacaggaaaggtaaagtgttt
tcatttgacgaatttatcgagaaagcttcggagattgaaagctttttcctgagaaagtac
agtgcatataaaaatctcagggattcggggcatgtggtcaaaaccggttttaaattcggg
acaaatttcagagtatacagaaaggtagagtcaatagagaaaatacctcattcggaatac
cttgtaaatgccatccctgcggattttgagttcaggctttcggttatgtccggagctgtc
aggcttgcaaacagcgtcaggaaaaaaatgctttttgcggttgagaaagacgaggaaatc
gagtacctggacatcagccggacgaagatgtaa
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