Methanosarcina barkeri Wiesmoor: MSBRW_0852
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Entry
MSBRW_0852 CDS
T03839
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mbw
Methanosarcina barkeri Wiesmoor
Pathway
mbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSBRW_0852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbw03019
]
MSBRW_0852
03009 Ribosome biogenesis [BR:
mbw03009
]
MSBRW_0852
Enzymes [BR:
mbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSBRW_0852
Messenger RNA biogenesis [BR:
mbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSBRW_0852
Ribosome biogenesis [BR:
mbw03009
]
Prokaryotic type
rRNA helicases
MSBRW_0852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
P-loop_SecA
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AKB50105
UniProt:
A0A0E3QJY1
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All DBs
Position
1026437..1028176
Genome browser
AA seq
579 aa
AA seq
DB search
MEKLAKFKALGLSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAF
GAPIIEKIPEKSGKVQAIVLTPTRELAIQVSEELNSLKGDKKLHIVPIYGGQSMTQQFRM
LKSGVDIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDK
RMLFFSATMPKPILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRIID
IEDEFYGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVA
TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIK
KTSKSAMKRGRIPEIKDVIKAKRARVKAELEETIKNEEYGDCLEMSEKFLEEYPAEKILA
ALLKYSFKEMFDESMYTEISGSSYVDRKGKTRLFIAMGKADGMTPEKLCEFIQEETGVSD
LKIRDAEIFPHFSFVTVPFAQASALLEIFKDKKRGRKPFIELAQKSKRRSSKSADEYRGG
TRNGSRSYSRNDSWNGSRNTNSKSYTRDTRTAKKKYSSY
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcattggggctttcagacagtatgttaaaagccctt
aaaaagaaagggtttgaagaaccaaccccaattcaggaaaaagtcatcccgctttttttg
aaaggagaatgtgatattatagggcaggctcagaccggaaccgggaaaacaacggctttc
ggagcccccattatagaaaaaattccggaaaaatcaggaaaggtgcaggctatagtcctg
accccgactcgagaattagcaatccaggtctcagaagaacttaactctctgaaaggagac
aaaaagctgcatattgtcccgatttatgggggacagtccatgacccagcagttcagaatg
ctgaaaagcggagttgatattgtcgtgggaactccaggaagggtcatcgatcaccttgag
cggaagagcttgaatcttgagaacattgcttatttcgtactggatgaagctgatgaaatg
ctcaatatgggctttattgatgatattaaggaaatcttaaaggcaactgggcctgataag
agaatgcttttcttttcagctacaatgccaaagcctatccttggcatcatcaagaaacac
atgaagaactatgaatatgttgctattaagaaagaagatcttgatgtgaaccttactgag
cagatttatttcgaagtcaaggaaagcgacaaatttgaagccctgtgcaggattatcgat
attgaagacgaattctacgggcttgtgttctgcagaacaaaaaccgatacctcccaactt
gcccagaagcttggagaccggggatatgcagccgatgctctgcacggtgatctttcccag
cgtgaaagggaaaagatactgaacaggttcagaaaacaaaagattaacatcctcgtagca
accgatgttgcagctcgaggtatcgatatcatggacctgacccacgtaattaactattct
cttccgcaagaccccgagtcttacgtacacaggataggaagaaccggtagggcaggaaag
cagggaactgcaattactttcgttacatctacggaatacaggcggctcacatacataaaa
aagacttcaaaatccgcaatgaagaggggccgaattcctgagataaaagatgtaattaaa
gctaaaagggcaagagtaaaagccgaactcgaagaaactataaaaaacgaggagtacgga
gactgtcttgagatgagtgaaaagttccttgaagaatacccggccgagaaaatcctggct
gctctcctgaagtactctttcaaagagatgttcgacgaaagcatgtacacagagatctcc
ggaagttcatatgtcgaccggaaaggcaaaaccaggcttttcatcgcaatgggaaaagct
gacggcatgacccctgagaagctctgcgagtttatacaggaagaaaccggagtaagcgac
cttaaaataagggatgcagaaattttcccgcacttctccttcgtaactgtaccttttgcc
caggcttcagccctgcttgaaatcttcaaagacaaaaagagaggtcgaaaaccctttata
gagcttgcccagaaatcaaagagaagaagctcaaagagtgcggatgaatatcgtggtggc
actcgtaatggctccaggagttattctagaaatgactcctggaatggctctcgcaatacg
aacagcaaaagttatacaagagatacacgaactgcgaagaaaaaatattcttcgtactaa
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