KEGG   Methanosarcina barkeri Wiesmoor: MSBRW_1139
Entry
MSBRW_1139        CDS       T03839                                 
Name
(GenBank) Putative ski2-type helicase
  KO
K03725  putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
mbw  Methanosarcina barkeri Wiesmoor
Brite
KEGG Orthology (KO) [BR:mbw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mbw03019]
    MSBRW_1139
Messenger RNA biogenesis [BR:mbw03019]
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Others
     MSBRW_1139
SSDB
Motif
Pfam: DUF5814 DEAD Helicase_C ResIII MGP3_C DEXQc_Suv3
Other DBs
NCBI-ProteinID: AKB50392
UniProt: A0A0E3QLB3
LinkDB
Position
complement(1410728..1413160)
AA seq 810 aa
MAIKDRMKQPLYMAELLIKDSYKGPRPLKIRLFTGKKKEEFIPPQQFIELLRSANRIMLA
EGGDPANEAAFLEMLKGFQLNADKVKICKHCWIKKRFNFVNSKSIKYNNELICLDCAKEE
LLRAVRSAGAPYGEKSIDFLEQVLSKTRDLDRTIRMLSPERLDPEFTRYDTIRTNPSSTT
VRVKSLPLQKKFKKMLLEKSETLLPVQALSIESGLLEGKNQFVVSATATGKTLIGEMAGI
QNLFNKKGKMLYLVPLVALANQKYDQFKERYSKLGFTTSIKIGAILIKTSQRVKMQTSPG
ADIIVGTYEGIDHMLRSGNADFLGKIGTVVVDEVHTLEDQERGHRLDGLIGRLRYVAPEA
QFIYLSATVANPEGYAKKLGARLVRYEHRPVPIDRHLLFCQENEKAKLISQLAKEEYSML
SSKKHRGQTIVFTNSRRNCHKLAGALSIRAAPYHAGLSQYERKKVETRFAKGELPVIVTT
AALAAGVDFPASQVIFESLAMGIDWISVQDFLQMSGRAGRPDYHDRGVVVLMPVPGKSYS
GSQSDTEEEVAIKLLQGEMLSAGVKYGEAEQLEEVLASVAVTSSVQDLRMIHNQMFGGYD
LNKLILRLQSYRFVERKGNRITLTRFGKIIAAHFLPVSKAFLIRDAVLGENEPLKIATNL
EFFDAAYFKYTNQIGSSLHVNMPSRIFQGATLDIIFDGESLSQLDAKIQELLLNFASDFL
TCKCKDSPYCGCAEQKFSEKIIKLRTEALEPAQIIKKLENKYGISAYQGDVFGYLDNAVR
NLDAVELIAKVHSKKGVAEEAKKLKKKVQG
NT seq 2433 nt   +upstreamnt  +downstreamnt
atggctataaaggaccggatgaaacagccgctttatatggccgaactcctcataaaagat
agttacaaagggcctcgccctcttaaaatcaggctttttaccggcaaaaaaaaagaagaa
ttcattccaccacagcagtttatagagcttctgcgcagtgcaaaccgaataatgcttgca
gaaggaggagatcctgcaaatgaggctgcttttctggaaatgcttaaaggatttcaactt
aatgcggacaaagtaaaaatctgtaaacactgctggataaagaagcgcttcaactttgta
aacagtaaatccatcaaatacaataacgaactcatctgcctggactgtgcaaaagaggaa
cttttgcgtgcagtccgttcggctggtgcgccgtatggggaaaaatccatagatttcctg
gagcaggtgctctcaaaaacccgagaccttgacaggactatccggatgctgagccctgaa
aggctggaccctgagttcacacgctacgatactataagaacaaatccatccagtactaca
gttagagtaaaaagcctgcctcttcaaaagaaattcaagaaaatgctgctcgagaaatcc
gagaccctgctgcctgtgcaagcattatcaatagaatccgggctcctagaaggaaaaaac
cagtttgtagtctcagcaacagcaaccggaaagacccttataggggagatggcagggatc
cagaacctctttaataaaaaaggaaaaatgctctacctcgttcctctggttgcacttgca
aaccagaagtatgatcagttcaaagaacgctattcaaaacttgggttcaccacatccata
aagatcggggcaattctcataaaaacgtctcagcgcgtgaagatgcagactagcccgggt
gcggatatcattgtagggacttacgaaggcatagaccatatgcttcggtcgggaaatgcc
gattttctgggcaaaatcggaactgtggtagtggacgaagtacatactctcgaagaccag
gagaggggccacaggttggacgggcttattgggagactaaggtacgtggcacccgaagct
caattcatctatctatctgcaaccgttgcaaatcccgaaggctatgcaaagaaactcgga
gcccggcttgtccgttacgagcacagaccggttcctattgacaggcatcttcttttctgt
caggaaaacgaaaaggcaaaattgatttcccagcttgcgaaagaagaatattcaatgtta
tcttcaaaaaagcacaggggccagacaattgtctttacaaactcccgtcgaaactgtcat
aaacttgcaggagccctttcgattcgggcagcaccctatcatgccgggctttcccagtat
gaaaggaagaaagttgaaactcgctttgcaaaaggagaacttccggtaattgtgaccacg
gctgcccttgcggctggggtggattttccggcttcccaggtgatctttgaatccctggca
atgggaatagactggatttcagtccaggattttctgcagatgagcggaagggcagggagg
cctgactaccatgataggggagttgttgtgctgatgcctgtgcctggaaaatcatattca
ggttcccagtccgataccgaagaagaggttgcaattaaactactccagggagaaatgctc
tcagcaggcgtaaaatatggagaagccgaacagcttgaggaagtgcttgcatcggttgca
gtcacctcctcggtgcaggaccttagaatgatccacaaccagatgtttggaggctacgac
ctgaataaattgattctgcgccttcaaagctaccgttttgtggaaagaaaaggaaaccga
ataacgcttacgcgttttggaaaaattattgcagctcatttccttcctgtatcgaaagct
tttctgattcgggatgcagtgcttggagagaatgaacccctgaagatcgcaaccaacctg
gagttttttgatgcagcgtatttcaaatatactaaccagatcggaagctccctgcatgtg
aatatgccttcaaggatttttcagggagctacacttgatataatctttgacggggagtct
ctttcccagcttgatgcaaaaatccaggaactcctgttaaactttgcttcggacttttta
acctgtaaatgcaaagattcaccttactgcggctgcgcagaacagaagttttcggaaaaa
ataattaagctgcgtacagaagctcttgagcctgcacagataataaagaaacttgaaaac
aagtacgggatctcggcctatcagggtgacgttttcgggtacctggacaacgcagtcaga
aaccttgacgccgtggaacttatagcaaaagtacactctaaaaagggagttgcagaagaa
gcaaaaaagcttaaaaagaaagttcagggttaa

DBGET integrated database retrieval system