Methanosarcina barkeri Wiesmoor: MSBRW_1139
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Entry
MSBRW_1139 CDS
T03839
Name
(GenBank) Putative ski2-type helicase
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
mbw
Methanosarcina barkeri Wiesmoor
Brite
KEGG Orthology (KO) [BR:
mbw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbw03019
]
MSBRW_1139
Messenger RNA biogenesis [BR:
mbw03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
MSBRW_1139
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5814
DEAD
Helicase_C
ResIII
MGP3_C
DEXQc_Suv3
Motif
Other DBs
NCBI-ProteinID:
AKB50392
UniProt:
A0A0E3QLB3
LinkDB
All DBs
Position
complement(1410728..1413160)
Genome browser
AA seq
810 aa
AA seq
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MAIKDRMKQPLYMAELLIKDSYKGPRPLKIRLFTGKKKEEFIPPQQFIELLRSANRIMLA
EGGDPANEAAFLEMLKGFQLNADKVKICKHCWIKKRFNFVNSKSIKYNNELICLDCAKEE
LLRAVRSAGAPYGEKSIDFLEQVLSKTRDLDRTIRMLSPERLDPEFTRYDTIRTNPSSTT
VRVKSLPLQKKFKKMLLEKSETLLPVQALSIESGLLEGKNQFVVSATATGKTLIGEMAGI
QNLFNKKGKMLYLVPLVALANQKYDQFKERYSKLGFTTSIKIGAILIKTSQRVKMQTSPG
ADIIVGTYEGIDHMLRSGNADFLGKIGTVVVDEVHTLEDQERGHRLDGLIGRLRYVAPEA
QFIYLSATVANPEGYAKKLGARLVRYEHRPVPIDRHLLFCQENEKAKLISQLAKEEYSML
SSKKHRGQTIVFTNSRRNCHKLAGALSIRAAPYHAGLSQYERKKVETRFAKGELPVIVTT
AALAAGVDFPASQVIFESLAMGIDWISVQDFLQMSGRAGRPDYHDRGVVVLMPVPGKSYS
GSQSDTEEEVAIKLLQGEMLSAGVKYGEAEQLEEVLASVAVTSSVQDLRMIHNQMFGGYD
LNKLILRLQSYRFVERKGNRITLTRFGKIIAAHFLPVSKAFLIRDAVLGENEPLKIATNL
EFFDAAYFKYTNQIGSSLHVNMPSRIFQGATLDIIFDGESLSQLDAKIQELLLNFASDFL
TCKCKDSPYCGCAEQKFSEKIIKLRTEALEPAQIIKKLENKYGISAYQGDVFGYLDNAVR
NLDAVELIAKVHSKKGVAEEAKKLKKKVQG
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggctataaaggaccggatgaaacagccgctttatatggccgaactcctcataaaagat
agttacaaagggcctcgccctcttaaaatcaggctttttaccggcaaaaaaaaagaagaa
ttcattccaccacagcagtttatagagcttctgcgcagtgcaaaccgaataatgcttgca
gaaggaggagatcctgcaaatgaggctgcttttctggaaatgcttaaaggatttcaactt
aatgcggacaaagtaaaaatctgtaaacactgctggataaagaagcgcttcaactttgta
aacagtaaatccatcaaatacaataacgaactcatctgcctggactgtgcaaaagaggaa
cttttgcgtgcagtccgttcggctggtgcgccgtatggggaaaaatccatagatttcctg
gagcaggtgctctcaaaaacccgagaccttgacaggactatccggatgctgagccctgaa
aggctggaccctgagttcacacgctacgatactataagaacaaatccatccagtactaca
gttagagtaaaaagcctgcctcttcaaaagaaattcaagaaaatgctgctcgagaaatcc
gagaccctgctgcctgtgcaagcattatcaatagaatccgggctcctagaaggaaaaaac
cagtttgtagtctcagcaacagcaaccggaaagacccttataggggagatggcagggatc
cagaacctctttaataaaaaaggaaaaatgctctacctcgttcctctggttgcacttgca
aaccagaagtatgatcagttcaaagaacgctattcaaaacttgggttcaccacatccata
aagatcggggcaattctcataaaaacgtctcagcgcgtgaagatgcagactagcccgggt
gcggatatcattgtagggacttacgaaggcatagaccatatgcttcggtcgggaaatgcc
gattttctgggcaaaatcggaactgtggtagtggacgaagtacatactctcgaagaccag
gagaggggccacaggttggacgggcttattgggagactaaggtacgtggcacccgaagct
caattcatctatctatctgcaaccgttgcaaatcccgaaggctatgcaaagaaactcgga
gcccggcttgtccgttacgagcacagaccggttcctattgacaggcatcttcttttctgt
caggaaaacgaaaaggcaaaattgatttcccagcttgcgaaagaagaatattcaatgtta
tcttcaaaaaagcacaggggccagacaattgtctttacaaactcccgtcgaaactgtcat
aaacttgcaggagccctttcgattcgggcagcaccctatcatgccgggctttcccagtat
gaaaggaagaaagttgaaactcgctttgcaaaaggagaacttccggtaattgtgaccacg
gctgcccttgcggctggggtggattttccggcttcccaggtgatctttgaatccctggca
atgggaatagactggatttcagtccaggattttctgcagatgagcggaagggcagggagg
cctgactaccatgataggggagttgttgtgctgatgcctgtgcctggaaaatcatattca
ggttcccagtccgataccgaagaagaggttgcaattaaactactccagggagaaatgctc
tcagcaggcgtaaaatatggagaagccgaacagcttgaggaagtgcttgcatcggttgca
gtcacctcctcggtgcaggaccttagaatgatccacaaccagatgtttggaggctacgac
ctgaataaattgattctgcgccttcaaagctaccgttttgtggaaagaaaaggaaaccga
ataacgcttacgcgttttggaaaaattattgcagctcatttccttcctgtatcgaaagct
tttctgattcgggatgcagtgcttggagagaatgaacccctgaagatcgcaaccaacctg
gagttttttgatgcagcgtatttcaaatatactaaccagatcggaagctccctgcatgtg
aatatgccttcaaggatttttcagggagctacacttgatataatctttgacggggagtct
ctttcccagcttgatgcaaaaatccaggaactcctgttaaactttgcttcggacttttta
acctgtaaatgcaaagattcaccttactgcggctgcgcagaacagaagttttcggaaaaa
ataattaagctgcgtacagaagctcttgagcctgcacagataataaagaaacttgaaaac
aagtacgggatctcggcctatcagggtgacgttttcgggtacctggacaacgcagtcaga
aaccttgacgccgtggaacttatagcaaaagtacactctaaaaagggagttgcagaagaa
gcaaaaaagcttaaaaagaaagttcagggttaa
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