Methanosarcina barkeri Wiesmoor: MSBRW_2245
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Entry
MSBRW_2245 CDS
T03839
Name
(GenBank) putative exosome complex exonuclease 2
KO
K12589
exosome complex component RRP42
Organism
mbw
Methanosarcina barkeri Wiesmoor
Pathway
mbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSBRW_2245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbw03019
]
MSBRW_2245
Messenger RNA biogenesis [BR:
mbw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSBRW_2245
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MSBRW_2245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
HopA1
Motif
Other DBs
NCBI-ProteinID:
AKB51498
UniProt:
A0A0E3QNR6
LinkDB
All DBs
Position
complement(2901621..2902403)
Genome browser
AA seq
260 aa
AA seq
DB search
MSEVIATLKKDYIYNLMIKGKRQDGRGFKDFRDIKLETNVIPKAEGSAKVTLGDTQVLVG
VKLQPGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGAIDI
KKLCISVGESVWIAYIDVHVLNDDGNIIDASSLAAIAALMTTIVPNEQHGIGADVPLAMK
EMPVGVTLAKIGSKLMVDPSLDEGAVCETKLTVVSSSDGSVAGMQKMGTVPFTEAEVLEA
IDMACEKAAEIRKLYLEALV
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagttattgctacgcttaagaaggactatatttataaccttatgattaaggga
aaacgccaggatggtcgtggatttaaagatttcagagatatcaaacttgaaacaaatgtt
atcccgaaagccgagggctcggcaaaggtaacgctgggagacacccaggtccttgtagga
gttaagcttcagccaggaactccttttccggattctcaggacgaaggcgtaattattact
aatctggaactcaatcctattgcttccccggaatttgagccaggcccacccagagaagaa
gcaatcgaaatggcaagggttgtagacaggggaatcagagaatcaggcgcaattgatata
aagaagctttgcataagcgttggagaatccgtctggattgcctatatagatgtccatgtc
ctcaatgatgatggaaatatcattgatgcatccagtctcgctgctattgcggcacttatg
actacaattgtcccgaatgagcagcatggaatcggtgcggacgtacctcttgcaatgaaa
gagatgcctgttggcgtgactcttgccaagatcggctcaaagctgatggtggacccgtca
ctggatgagggagcggtttgtgagacaaaattaactgtggtctcaagttcggatggatcc
gtcgcaggcatgcaaaaaatgggcactgttccgttcaccgaggctgaggtgctggaagca
atagatatggcatgtgaaaaggcagctgagatcaggaaactttacctggaagcactggta
taa
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