Methanosarcina barkeri Wiesmoor: MSBRW_2247
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Entry
MSBRW_2247 CDS
T03839
Name
(GenBank) putative exosome complex RNA-binding protein 1
KO
K03679
exosome complex component RRP4
Organism
mbw
Methanosarcina barkeri Wiesmoor
Pathway
mbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSBRW_2247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbw03019
]
MSBRW_2247
Messenger RNA biogenesis [BR:
mbw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSBRW_2247
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MSBRW_2247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
KH_1
RRP4_S1
S1
RRP40_S1
KH_2
Motif
Other DBs
NCBI-ProteinID:
AKB51500
UniProt:
A0A0E3QMD7
LinkDB
All DBs
Position
complement(2903975..2904757)
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AA seq
260 aa
AA seq
DB search
MDKKIVIPGDLISENSKKAGYGTYVKNDKIYSLFCGIENLKEDKVGVIPLAGVYIPSAND
VVIGIVIVVTPSNWIMDIASPYDGLFHVSEYPRRIESREMHEVLNVGDSIILRVKDVDNS
MKVELALRDSSFHKLKTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI
DGKDDDVELLSKALRKIEAEAQRSGLTDRIYNFLKNERSKQKESKPAKFFKSGKKEVKLP
KEDHSEEIYRKIDVLLDPNN
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaaatagtgatccctggtgacctgatatccgagaattcgaaaaaagctgga
tacgggacttatgtcaagaacgacaagatctattctttattttgtggcattgaaaatctc
aaagaagataaagttggagtgatccctcttgcgggagtttatatcccttccgcaaatgat
gtggtgatcgggatcgttattgtggttactccatccaactggataatggatattgcttct
ccttatgacggcctgttccatgtatccgagtatcccagaagaatagaatcccgggagatg
catgaagttctgaatgtaggcgactctataatccttagagtaaaagatgtagataattcc
atgaaagtcgagcttgcccttagagattcgagcttccataaattgaaaacaggtcagatc
gttgaagttgagcctgtgaaagtcccacgtgtgataggacacggtggttccatgatctca
atgctgaagaaagaaacaaactgcagcattttcgttggccagaacggcagaatatggatc
gatggaaaggacgatgatgtggagcttttaagtaaggctctccggaagatcgaagccgaa
gcccagcgttccggattgacggacaggatctacaactttttgaaaaatgagcggagcaag
cagaaagagtcaaagcccgccaagttttttaaaagtggtaagaaagaggtaaagttgcca
aaagaagatcattccgaagagatttacaggaagatcgatgtgttactggatccaaataac
tga
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