Methanosarcina barkeri Wiesmoor: MSBRW_3095
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Entry
MSBRW_3095 CDS
T03839
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
mbw
Methanosarcina barkeri Wiesmoor
Pathway
mbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSBRW_3095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbw03019
]
MSBRW_3095
Messenger RNA biogenesis [BR:
mbw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSBRW_3095
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MSBRW_3095
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
OB_RRP5_4th
ECR1_N_2
HypA
S1
zf-C3HC4_3
Motif
Other DBs
NCBI-ProteinID:
AKB52348
UniProt:
A0A0E3QQH5
LinkDB
All DBs
Position
complement(4046504..4047421)
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AA seq
305 aa
AA seq
DB search
MTGPSEGKSVAENVTQITSESRDQYKGQSRDQFKTQPRGQVKNQPREQSREYKSQSRDHF
RGRPRDQLKGQSRSQSKDQFRGDQGKKRRFPYQKKGSRERSNMPESKAPQEAKTPEEELE
KGGFVLPGELVGTTEEFKPGEGTTVSAGDIYSTATGTVIIDRKARVVSVRPRTLTPNILK
VGDIVYGKITDVRESGAMVEVAGIEGKEDREIVNVRLGDIHVSNVRDSYVKRLSDEFRHF
DIVRARVLDTERMRLTTAEDSLGVVKAYCSNCKGELVLEGKKLKCPVCNMTETRKISTEY
GKGIK
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
ttgactggcccgagcgaaggaaaatcggttgccgaaaatgtaactcaaattacttccgaa
agcagagatcagtacaaaggccagtcgagagatcagtttaagacccagcccaggggacag
gttaaaaatcaaccaagagagcagtccagagaatataagagccaatcaagagatcacttc
agggggcgtcccagagatcagttaaaaggtcagtccaggtctcagtcaaaggaccagttc
aggggagaccagggcaagaaaagaagattcccttaccagaaaaaaggctccagggaaaga
tcgaatatgcctgaatcaaaagctccccaagaggctaagactccggaagaagagcttgaa
aaaggaggttttgtgcttcctggagagcttgtgggaacgactgaagagttcaagcctggg
gaaggaacaactgtgtctgccggagatatttactctacagctaccggtaccgtaattatt
gacaggaaagcaagagtagtctcggtcaggccacgcacgctcactccgaatattcttaaa
gtaggggatattgtctatggaaagataactgatgtgcgcgaatccggggcaatggtggaa
gttgcaggaattgaaggcaaagaagacagggaaattgtcaatgtgcgtttgggagacatc
catgtgtcgaatgtgcgtgactcttacgttaagagactttcagatgagttcagacacttt
gatattgtcagggccagggttctcgacactgaaagaatgcgtcttacaacagctgaagat
tccctcggagttgtaaaagcctactgttcaaactgcaaaggagaactcgtgcttgaaggg
aaaaagcttaaatgccctgtctgcaatatgaccgaaactcgcaaaatctcaaccgagtac
gggaaaggaataaaataa
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