Methanosarcina barkeri Wiesmoor: MSBRW_3350
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Entry
MSBRW_3350 CDS
T03839
Name
(GenBank) DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mbw
Methanosarcina barkeri Wiesmoor
Pathway
mbw03022
Basal transcription factors
mbw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mbw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSBRW_3350
09124 Replication and repair
03420 Nucleotide excision repair
MSBRW_3350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbw03021
]
MSBRW_3350
03036 Chromosome and associated proteins [BR:
mbw03036
]
MSBRW_3350
03400 DNA repair and recombination proteins [BR:
mbw03400
]
MSBRW_3350
Enzymes [BR:
mbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
MSBRW_3350
Transcription machinery [BR:
mbw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MSBRW_3350
Chromosome and associated proteins [BR:
mbw03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
MSBRW_3350
DNA repair and recombination proteins [BR:
mbw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MSBRW_3350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Zot
PhoH
ATPase
OmpH
AAA_34
TIP49
HTH_56
Motif
Other DBs
NCBI-ProteinID:
AKB52603
UniProt:
A0A0E3QPZ1
LinkDB
All DBs
Position
4362237..4364489
Genome browser
AA seq
750 aa
AA seq
DB search
MEKIHSALLNEKTVLFEGACGTGKTLSALAPALSVGKKLNKVVIIVTNVHQQMVQFINEA
REISRDNDIKTIVFKGKASMCPKNLDYEECRLKGENTYDLLDLEREISSKEKELKDAYEK
YKRTKDPALYSLRTELEKELEETKKKSRALRNNSCLELYEVLKFEGNEFSNWLFSDVRSP
EEILEYAEDRDMCGYELLKKELKNAELLICNFHHVLSAEIFMMLLKWLERDPEDVILIFD
EAHNIEASARSHSSTMLSELTIEKALSEVGETPESDNSLMLGKETDSGGGIPLDQDYAAR
LYAKKLFTCLLTALRDTYAAKLKFGERNRLGKHWQDIKISDPYERFDILKARFLREAMKE
GFADEEKVLTRLREIGEFGGRLEEIYAENYKKGLLAVPKRSQIRYVADFLSSYLVLSDRQ
NYYPILNVRRDFKSDRIAGRIELFTCIPKNVTQPLFDSIYAAVLMSATLRPFEMIKSTLG
ISREVEEISYSTTFPRERRLTLAVSIPPLFAKNRDSPETLESIKEALLAATVASPGNVII
YFQSYAEALRYTKLLEPELSIPIFLDETGVSAQEIRKKFFKIGEQGGKALLITYLWGTLS
EGVDFRDSRGRTVIIVGIGYPALNDRIKAVESAYDEVFGCGEGWEFAVQVPTIRKVRQAM
GRIVRSPDDYGVRILLDSRYQGSQVRKLGKFSVFDYFPPEEKREFIDIAPKDVGSIVKEF
FAHVTHSNLENESKSQTSSRVGFGSLAEKL
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatccactcggctctcctgaacgaaaaaaccgtactctttgaaggagcatgt
ggaacaggcaagactttaagtgcacttgctcctgcactgagtgtggggaaaaaactcaat
aaggtcgttattatagtcactaatgtccatcagcagatggttcaatttataaatgaggca
agagagatttcccgggataacgacataaaaacaattgttttcaagggcaaggcttcgatg
tgccccaaaaatctcgattacgaagaatgcaggctcaaaggagaaaatacctatgacctc
cttgaccttgagcgggaaatttcttcaaaagaaaaagagctcaaggatgcctatgagaaa
tacaaacgaacaaaagatcctgctctttattccctgagaactgagcttgaaaaagaactc
gaagaaactaagaaaaaatctcgggctttgaggaataattcctgcctggagttatatgaa
gtcctgaaatttgaaggtaacgaattttccaactggcttttttccgacgtaagaagcccg
gaagaaatcctggagtatgccgaagaccgggatatgtgcgggtatgaactgctgaaaaaa
gaactcaaaaacgccgaacttctaatctgcaattttcatcatgtccttagtgccgaaatt
ttcatgatgctgcttaaatggcttgaacgagatcctgaagatgttattctgatttttgac
gaagcacataatattgaggcatctgcccgttcccactcttcaacaatgctctcggaactg
actattgaaaaagctctttcggaagtaggtgagactcctgaatctgacaattcccttatg
ttaggaaaagaaactgactcaggaggtggcattccccttgaccaggactatgcggctaga
ctatatgcaaaaaagctgtttacctgcctccttaccgctctcagggatacatatgctgca
aaattgaagttcggggaaagaaacaggcttggaaaacactggcaggacattaagatcagc
gacccttatgagcgctttgacatcctgaaagctcgctttttgcgagaagcgatgaaggaa
ggctttgcagatgaagaaaaagtcctcacaaggctgcgggagattggcgagtttggagga
aggctggaagagatttatgcggaaaattacaaaaaagggcttcttgcagttccgaaacgt
tcccagatccggtatgttgcagactttttatcctcttacctcgtactttcggacaggcaa
aactactatccaattctgaatgtgcgcagagatttcaaaagcgatagaatagccggcagg
attgagcttttcacatgcattcctaaaaacgtgactcagcctctgtttgattccatttat
gcagcagtactcatgtcagctacactccgacccttcgaaatgataaaatccacgcttggc
atctcaagggaagtggaagagatttcctatagtacgacctttcccagggaaaggaggctt
acacttgcggtttccattcctccgctttttgcaaagaaccgtgacagcccggaaacgctt
gagagcattaaagaagccctgcttgcagctactgttgcatcgccaggaaacgtgattatt
tacttccagagctatgctgaagcactccgctatactaaactccttgaacctgaactttct
attcctattttccttgatgagacaggggtttcagcccaggaaatccgaaagaagtttttc
aaaatcggagagcagggaggaaaagccttacttataacctatctctggggaacattgagt
gaaggtgttgatttcagagattccaggggcaggaccgtgattatagtgggaatcggatat
ccggccctaaatgaccgaatcaaggctgtcgaatctgcttatgatgaagttttcggctgt
ggtgaaggctgggagtttgcagttcaggtgcctacaatcaggaaggtcagacaggcaatg
ggaaggatagtgcgttctccagacgactatggagtaagaattctccttgattctcgctac
cagggctctcaggtacgtaaactcggtaaattttcagtttttgattatttcccgcctgaa
gaaaagagggagttcatcgacattgcacccaaggatgtgggaagtatcgtgaaagaattt
tttgcacacgtcacgcatagtaatctcgaaaatgaatcgaagtcccagacttcaagtcgt
gtgggtttcggaagccttgctgaaaagctttga
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