Methanosarcina barkeri MS: MSBRM_0038
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Entry
MSBRM_0038 CDS
T03838
Name
(GenBank) Replication factor A (ssDNA-binding protein)
KO
K07466
replication factor A1
Organism
mby
Methanosarcina barkeri MS
Pathway
mby03030
DNA replication
mby03420
Nucleotide excision repair
mby03430
Mismatch repair
mby03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSBRM_0038
03420 Nucleotide excision repair
MSBRM_0038
03430 Mismatch repair
MSBRM_0038
03440 Homologous recombination
MSBRM_0038
03460 Fanconi anemia pathway
MSBRM_0038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mby03000
]
MSBRM_0038
03032 DNA replication proteins [BR:
mby03032
]
MSBRM_0038
03400 DNA repair and recombination proteins [BR:
mby03400
]
MSBRM_0038
Transcription factors [BR:
mby03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
MSBRM_0038
DNA replication proteins [BR:
mby03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
MSBRM_0038
DNA repair and recombination proteins [BR:
mby03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
MSBRM_0038
MMR (mismatch excision repair)
MSBRM_0038
DSBR (double strand breaks repair)
HR (homologous recombination)
MSBRM_0038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
Ssb-like_OB
REPA_OB_2
OB_MEIOB_N
TriTu
POT1PC
RecG_wedge
DUF3127
BRCA-2_OB1
Motif
Other DBs
NCBI-ProteinID:
AKB53036
UniProt:
A0A0E3LMH6
LinkDB
All DBs
Position
complement(16649..18103)
Genome browser
AA seq
484 aa
AA seq
DB search
MTDIESIYEKLSHVISKEDFLQRVQEKVESMGGLCDEPMAAMLVANELGFSDVGRDSVKI
ENITAESGQINFVAKVVSVFETKEFTRNDGTIGRVGNIIVGDETGKIRLTLWDNMADLIK
AGKIIAGQTLQISGYAKQGYSGVEVNVGNNGVLAESEEEIDVAANNQKIKDIKDGMGDLN
LTGKVLEISDVRTFQRKDGTSGKVGNLLLGDSTGTVRVTLWDDRTEFLNQIEYGDTVELV
NAYARENAFTQKVELQVGNRSIIKKSEKKVEYEEKFTPIEDIKADMNNINVSGRILDIGE
IRTFEKKDGSTGRVGNLLLGDSTGKIRLTLWDEKTSFLDEVDFDETIEVLHAYSRENAFN
QQVELNLGNRGIIQKSEKEIEYREKFTDIADIIPGESYSVQGKVSEIGELREFEREDGTE
NVVANLQLKDETGSIRLTLWGEQAYVIEDLDIDSEIQIINAYAKYGLNEEIELSIGNRSR
VIML
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgacagatattgaatcaatctatgaaaaacttagccatgttatcagtaaagaggacttc
ctgcaacgtgtacaggaaaaggtcgaaagcatgggagggctttgcgatgaacctatggct
gccatgctggttgccaacgaacttggattttcggatgtaggccgggacagtgtaaagatt
gaaaacattacagctgagagcggacaaattaactttgttgcaaaggttgtgtcggttttt
gagaccaaagaatttacccgaaacgacgggacaataggtagagtcggaaatataattgtt
ggagatgaaaccggcaagattcggctaacgctctgggacaacatggcagacctcataaaa
gctggaaaaatcatagcagggcaaaccctccagatcagcggctatgcgaagcagggatac
tcaggagtggaagtcaatgtgggaaataatggagtcctggccgagagtgaagaagaaatc
gatgtagctgccaacaatcagaaaataaaggatataaaagacggcatgggagacctgaat
ttgacaggaaaagtcctggaaatttcagatgtaaggaccttccagcgaaaagacggtacc
agcggaaaagtaggaaaccttcttcttggagacagtacaggcacagtcagagtgaccctc
tgggacgataggaccgagtttctgaaccagatagaatacggagacactgtggagctggtc
aatgcttatgcgcgggagaatgcctttacccagaaagttgagttgcaggtgggaaaccga
agtataataaagaagagtgagaaaaaagtcgagtacgaagagaaattcaccccaattgag
gatataaaggctgatatgaacaatattaacgtttccggtagaatactcgatataggggaa
atccggacttttgagaaaaaagacgggtctaccggaagagtcggaaatcttcttcttggc
gattccactggaaaaatcaggctgactctatgggatgaaaaaacaagctttctggatgaa
gtcgattttgacgagactatagaagtacttcatgcttattctcgggaaaatgccttcaac
cagcaggtggaactcaatctcggaaaccggggaataatccagaagagtgaaaaggaaatt
gaatacagagaaaagtttacggacatcgctgatattatccctggagaaagctattcggtc
cagggtaaggtttccgaaataggagaactccgagagtttgaaagagaggatggaaccgag
aacgtggttgcaaatctccagttaaaagacgaaaccggcagcataaggctaactctctgg
ggagagcaggcttatgtgatcgaagatcttgatattgactctgaaatccagatcattaat
gcatatgcgaagtatggcttgaatgaagaaatcgaactgagtatcgggaatcgaagcaga
gtaattatgctttaa
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