Methanosarcina barkeri MS: MSBRM_0351
Help
Entry
MSBRM_0351 CDS
T03838
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mby
Methanosarcina barkeri MS
Brite
KEGG Orthology (KO) [BR:
mby00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mby03016
]
MSBRM_0351
Enzymes [BR:
mby01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MSBRM_0351
Transfer RNA biogenesis [BR:
mby03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MSBRM_0351
Prokaryotic type
tRNA splicing ligases
MSBRM_0351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKB53349
UniProt:
A0A0E3QSB0
LinkDB
All DBs
Position
429033..430535
Genome browser
AA seq
500 aa
AA seq
DB search
MVESEDTAIEELSTENVQKEVKGMVRKLSENEWEIPVGHIPNMRVPGRLFVSQNLLEGIE
PGTIDQIANVATLPGIQKYSMAMPDAHLGYGFAIGGVAAFDAEEGIISPGGVGFDINCGV
RLIRTNLQKEEVVPNIKRLTDELFSNIPAGVGSKSRIRASDQELDSAFLEGANWAVEAGY
GVEADVKHCEANGSMEGADPAQVSTKARKRGKPQLGTLGSGNHFLEVQYVDKIYDQEIAS
TFGLQEGQVTVMIHCGSRGAGHQICTDHLKELSQAVKNYKIEIPDKQLACAPAQSREAQN
YFKAMLCAANYAWANRQIITHWTRESFEKIFGRDADDLGMDLLYDVAHNVAKLEKHIVDG
KKKEVYVHRKGATRAFPPGHPEVPAVYRDVGQPVLIPGSMGTPSYILCGSEEAMNVSFGS
ACHGAGRVMSRAHAKKEFRGQSIKENLEARGITVRATHPSVIAEEAPDVYKSSSEVVNVV
HELGIARKVARVLPLGVTKG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggtagaaagtgaagatacagctattgaggaattaagcacggaaaacgtacagaaagag
gtgaagggtatggtcaggaaactttctgaaaatgaatgggaaattcctgttgggcacatt
cctaacatgcgggttccaggccgcctgtttgtatcccaaaatttgcttgaaggcattgaa
cccgggactattgaccagattgcaaatgtggcaaccttacctggtattcagaagtactct
atggcaatgcctgatgctcatcttggctatggctttgctatagggggagttgccgctttt
gatgcagaagaaggaattatcagccctggcggggtgggctttgatatcaactgcggggta
aggctcattcgtaccaatcttcagaaagaagaggtagttccaaacataaaaaggttaacc
gacgagctttttagtaacatacccgcaggcgttggttccaaaagtcggatcagggcttcg
gaccaggaactggacagtgcttttctagagggagcaaactgggctgtagaagccggatat
ggcgtagaagctgatgtcaaacactgtgaagctaatggatctatggaaggagccgaccct
gcccaggtaagcacgaaagccagaaaaagaggaaaacctcagttaggaactcttggaagc
ggcaatcacttccttgaggttcagtacgttgataagatctatgatcaggaaatagcttcg
acctttgggcttcaggaaggccaggttacggtaatgattcactgcgggtcaagaggtgca
gggcaccagatttgtactgaccacttaaaggaactctctcaggccgtaaagaactataaa
attgaaattccggacaaacaacttgcctgtgcccctgcccagtcaagggaagcccagaac
tattttaaagccatgctctgtgctgcaaattatgcatgggcaaatcgtcagataattact
cactggacaagggaatcatttgaaaaaatatttggaagagatgctgacgatctgggcatg
gatctgctttatgacgttgcccacaacgtggcaaaacttgaaaaacatattgtggacggc
aagaaaaaagaggtgtatgtgcacaggaaaggagcaacaagagccttccctccagggcat
cccgaggttcctgccgtatacagagatgtaggtcaaccggtgctgattcctggaagtatg
gggactccttcttatatactatgcggttcagaagaggctatgaatgtttctttcggtagt
gcctgtcatggggctggtagagtcatgagcagagcacatgcaaagaaagaattccgcgga
cagagcataaaagaaaaccttgaagctcggggtattacagtaagagccacccatccttca
gtcattgcagaggaagctccagatgtatacaagtctagcagcgaagtggtaaatgtcgtg
cacgaactcggaattgcccgtaaggttgcaagagttcttcctttaggggttacaaaaggt
taa
DBGET
integrated database retrieval system
