Methanosarcina barkeri MS: MSBRM_0570
Help
Entry
MSBRM_0570 CDS
T03838
Name
(GenBank) tRNA-intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
mby
Methanosarcina barkeri MS
Brite
KEGG Orthology (KO) [BR:
mby00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mby03016
]
MSBRM_0570
Enzymes [BR:
mby01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
MSBRM_0570
Transfer RNA biogenesis [BR:
mby03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
MSBRM_0570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
tRNA_int_end_N2
Motif
Other DBs
NCBI-ProteinID:
AKB53568
UniProt:
A0A0E3QST4
LinkDB
All DBs
Position
complement(717142..718194)
Genome browser
AA seq
350 aa
AA seq
DB search
MKTQLKGDRVLAGKEAVAELYKTGYFGRPKGEGLELSLVEAAFLLSRGKLEIELEGTLLD
FRTFFEQASLRQPNFELKYIVYKDLKERGYYVQPSAADFRVYPRGSHPGKNAANIFVHVQ
SERQLLPVKLLQDSVTSAENVHKQFILAVVDEESDLTFYEVKTAVPKGEMPEPYPAIKTD
ATFLEDRVIAWDSQASETLYKSGFYGKMLDSERLQLSLVESLYLFSRGIITVRDRKGKVF
SFDEFVEKASEIESFFLRKYSAYKNLRDSGHVVKTGFKFGTNFRVYRKVESIEKIPHSEY
LVNAIPADFEFRLSVMSGAVRLANSVRKKMLFAVEKGEEIEYLDISRTKM
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacacaacttaaaggagaccgggtccttgccggaaaggaagcggtagccgaactt
tataaaactggttacttcgggcgtcctaaaggcgaagggcttgaactctcgcttgtagaa
gctgcttttcttctgtccagaggaaaactcgagatcgaacttgaaggcacactgctcgat
tttagaacctttttcgaacaggcctctttgaggcagccgaattttgagctgaaatatata
gtttataaggaccttaaagaaagagggtactatgtccagccatcagctgcagatttccgg
gtgtatcccagaggcagccacccgggtaaaaatgcagcaaatatttttgttcatgtccag
tctgaaagacagctccttcctgtaaaacttcttcaggactcagttacctcggcagagaac
gtgcataagcagtttatccttgctgtggtggatgaagaaagtgaccttaccttctatgag
gttaaaaccgcagttcccaaaggagaaatgcctgagccatatcctgccatcaaaaccgat
gccactttcctagaagacagggtaatagcctgggattctcaggcttcggaaactctctat
aaaagtggcttttacggaaaaatgctggactccgagaggttgcagctttccctggtcgaa
tcactttacctcttttccagaggcataataacggttcgggacaggaaaggtaaagtgttt
tcatttgacgaatttgtcgagaaagcctcggagattgaaagctttttcctgagaaagtac
agtgcatataaaaatctcagggattcggggcatgtggtcaaaaccggttttaaattcggg
acaaatttcagggtataccgaaaggtagagtcaatagagaaaattcctcattcggaatac
cttgtaaatgccatccctgcggattttgagttcaggctttcagttatgtctggagctgtc
aggcttgcaaacagcgtcaggaaaaaaatgctttttgcagttgagaaaggtgaggaaatc
gagtacctagatatcagccggacgaagatgtaa
DBGET
integrated database retrieval system
