Methanosarcina barkeri MS: MSBRM_1006
Help
Entry
MSBRM_1006 CDS
T03838
Name
(GenBank) Serine hydroxymethyltransferase / L-threonine aldolase / L-allo-threonine aldolase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
mby
Methanosarcina barkeri MS
Pathway
mby00260
Glycine, serine and threonine metabolism
mby00630
Glyoxylate and dicarboxylate metabolism
mby00670
One carbon pool by folate
mby00680
Methane metabolism
mby01100
Metabolic pathways
mby01110
Biosynthesis of secondary metabolites
mby01120
Microbial metabolism in diverse environments
mby01200
Carbon metabolism
mby01230
Biosynthesis of amino acids
mby01240
Biosynthesis of cofactors
mby04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
mby00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
MSBRM_1006
09102 Energy metabolism
00680 Methane metabolism
MSBRM_1006
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
MSBRM_1006
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
MSBRM_1006
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
MSBRM_1006
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
MSBRM_1006
Enzymes [BR:
mby01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
MSBRM_1006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
DsrE
DegT_DnrJ_EryC1
OKR_DC_1
Motif
Other DBs
NCBI-ProteinID:
AKB54004
UniProt:
A0A0E3QTY8
LinkDB
All DBs
Position
complement(1324166..1325404)
Genome browser
AA seq
412 aa
AA seq
DB search
MSYIEKIDPELFEAIKKEAERQEYKLNLIASENYTSKAVMEAQGSVLTNKYAEGYSGKRY
YGGCDFVDIAEDLAIARAKKIFNANYVNVQPHSGSGANMAVYFSVLHPGDTIMSMDLSHG
GHLSHGSPVSFSGKLFNIVPYGVSKKTEMLDYSELMKKAKENKPQMIVCGASAYPREIDF
KQFREIADEVGAYLLADIAHIAGLVVAGVHPSPVPYADFVTSTTHKTLRGPRGGIIISRT
EELATGINKAVFPGLQGGPLMHVIAGKAVAFKEAMSEKFKQDQVQTVKNAKTLCKCLKEK
GFDMISGDTDNHLMLVNLNNMNITGKDAEAALSKAGIIANKNTVPFETRSPFITSGVRLG
TPACTTRGMKETEMELIADYIETAITNSENDKILSETSDKVRELCSRFPVYC
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatattgaaaaaattgacccggaattgttcgaggctataaaaaaagaagccgag
cgccaggaatataaactgaaccttatcgcatctgaaaattatacgagcaaagccgttatg
gaagctcagggatcagttctgaccaataaatatgccgaaggatactccggcaagcggtac
tacggcggctgcgatttcgtggacattgccgaagatctcgcaattgccagggcaaagaaa
atctttaacgcaaattacgtaaacgtccagccccactctggttctggagctaatatggct
gtctatttctcggttttgcatcctggagataccatcatgtccatggacctctctcacggt
gggcatctttctcacggcagccctgtgagtttttccgggaaactctttaatattgtgcct
tacggagttagtaaaaagactgagatgctggactattccgagcttatgaaaaaagcaaag
gaaaacaaaccgcaaatgattgtttgcggcgcttcagcttatcctcgtgaaatcgatttc
aagcagttccgcgaaattgctgacgaggtcggagcctatctgcttgcagatattgctcac
attgcaggtcttgtagttgcgggtgtgcacccgagtcctgtgccttatgcggactttgtt
accagcacaacccacaaaactctccggggcccaagaggcggaattattatctccaggaca
gaagaacttgcgaccggaattaacaaagcggttttccccggccttcagggtgggcctctc
atgcacgttatagctggaaaggcagtagcctttaaagaagcaatgagtgagaagttcaaa
caggatcaggttcagaccgtaaagaacgcaaaaaccctctgcaaatgcctgaaagagaaa
ggttttgatatgatctctggcgacacggataatcatcttatgctcgtcaatctcaacaat
atgaatataacaggcaaggatgcagaagccgccctgagcaaagccggaattattgcaaac
aaaaacacggtgccttttgagactcgcagtccatttatcacaagcggcgtaaggctcgga
acccctgcctgtaccacaaggggtatgaaggaaacggaaatggaattaattgccgactat
attgagaccgcaatcacaaactcagaaaacgataagattctgtcagaaacaagtgacaag
gtcagagaactctgttcaaggttcccggtttattgttaa
DBGET
integrated database retrieval system
