Methanosarcina barkeri MS: MSBRM_1575
Help
Entry
MSBRM_1575 CDS
T03838
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mby
Methanosarcina barkeri MS
Brite
KEGG Orthology (KO) [BR:
mby00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mby03032
]
MSBRM_1575
03400 DNA repair and recombination proteins [BR:
mby03400
]
MSBRM_1575
Enzymes [BR:
mby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MSBRM_1575
DNA replication proteins [BR:
mby03032
]
Prokaryotic type
DNA Topoisomerases
MSBRM_1575
DNA repair and recombination proteins [BR:
mby03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MSBRM_1575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
HHH_5
Cdd1
DUF4332
SAM_BAF
DNA_pol_lambd_f
Cas_TM1802
IMS_HHH_1
Peptidase_C48
Motif
Other DBs
NCBI-ProteinID:
AKB54573
UniProt:
A0A0E3QVB7
LinkDB
All DBs
Position
complement(2050000..2052315)
Genome browser
AA seq
771 aa
AA seq
DB search
MHLIVTEKNIAARRIAAILAPKNPKKDRVSGVDVYRYEIVSDEEKQETVVVGLSGHIVGI
DFPKEYNNWQKVEAKTLIDADIITTPINRKIVTALKGLGKKASRVTIATDYDREGELIGV
EALNIIKQVNPDVSFDRVRYSAITPKAIEAAFSNATNVDFNLADAGHSRQVIDLVWGAAL
TRYISLAAGRLGKMFLSVGRVQSPTLSLIVDREKERNVFVPTPYWEIYAELQNTEGKTFS
AQHSTRRFLDKKEATKVFKKLGKKAELKGIEKGKKTDQPPTPFNTTGFISAANSIGLSPA
NAMRIAEALYTNGYISYPRTDNTVYPETLDLKAQIEIFKEGPFKEYAEALLEKAELIPTR
GKKETTDHPPIFPASLAKESDLKEDEWKVYELVVRRFFATFAGPSEWETMRLKLDINEEE
FRSNGARLVEPGWRWYYPYNAPEDRLFPELHEGDSLKVIKKDMLDKETQPPGRYGQGRLI
NIMEELGLGTKATRHEIISKLYSRAYIHGNPVQPTNTSFAVMDTLETYSPTITKPDMTKL
LEENMDLIAEGKIKESAVLEESREILKQVFSELDKNREKIVESLQAGLREDKIIGTCSSC
GNELIIRRSKRGGRFIGCNNYPNCTFSLPLPRSGQIIVTDKVCEAHGLHHIRIINSGKRP
WDLGCPQCNFIEWQKTQQEEQAKQPKKEKPKSIQDLEGVGKATAGKLEDAGITSVEALAE
ADPVELAKAIKTSVKRVKNWQISCNGTVTVESNSTAEGSSTVKGNCTVEDA
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttattgtaacggaaaaaaatatagcagcaaggaggatagctgcgattctggct
ccaaaaaacccgaagaaagatagagtcagcggagtagacgtgtaccggtatgagattgtg
tccgatgaagagaagcaggagactgtagttgtagggctgtcgggccatatcgtagggatc
gactttcccaaggagtacaataactggcagaaagtggaagctaaaacccttatcgacgcc
gacatcataacaactcctatcaaccggaagattgtaactgcacttaaaggcctgggaaaa
aaggcgagcagggttacgattgccactgactatgaccgggaaggagaactgatcggagtc
gaggctctcaatatcataaaacaggtaaatccagatgtttcttttgaccgggtgcgctac
agtgcgataaccccaaaagcaatagaagccgcgttttcaaatgcaacaaatgttgatttt
aatctcgcggacgccggccattccaggcaggtcattgaccttgtctggggtgcagccctt
acccgttatatttctcttgctgcaggcaggctcgggaagatgtttctttccgtagggagg
gtacagtcgccaactctttctcttattgttgacagggaaaaagaaaggaatgtttttgtc
ccaactccttactgggaaatctatgccgaacttcaaaatacagaaggaaaaaccttttca
gctcagcactcaacccgccgtttcctggataaaaaggaggcaacaaaagtcttcaaaaaa
ctggggaaaaaggctgaattaaagggaatcgaaaaagggaaaaagaccgatcagcccccg
actccttttaataccacaggtttcataagcgcagcaaactcaatcggactcagtcccgca
aacgcaatgcgcatagctgaagcgctctatactaatggttatatttcgtatcccaggact
gacaatacggtttatcccgagacccttgacctgaaggctcagattgagattttcaaagaa
ggtccctttaaagagtacgcagaggctctgcttgaaaaagccgaactcattcctacgcga
ggaaaaaaggaaactaccgaccacccacctatttttccggcttcccttgcaaaagagtcc
gacttaaaagaagatgagtggaaggtctacgaacttgtagtcagacgcttttttgcgact
tttgccgggccaagcgaatgggaaaccatgcgcttgaaacttgacatcaacgaggaagag
ttcaggtcaaacggggcaagacttgtggaaccgggatggagatggtactatccttacaat
gcgcctgaagacaggttgttccctgaacttcatgaaggcgattccctgaaagtgattaaa
aaagatatgctggataaagaaacccagccgcctggccgttacggacagggaagacttatc
aatattatggaagagctagggcttggaacaaaagcaacgcggcacgagataatcagcaag
ctttattccagggcctatatacacgggaatcctgtgcagcctacgaatacctcttttgca
gtaatggacactcttgagacgtattcccctactatcacaaagccggacatgacaaagctg
cttgaagaaaacatggacctgattgctgagggcaagatcaaagagtctgccgttcttgaa
gagtcgcgggagatattaaagcaggtcttctcggaactcgataaaaaccgggaaaaaatc
gtggaatctctccaggcaggtctcagagaagataaaatcataggaacctgctctagctgc
ggaaatgagcttataatccggcgttcgaaaaggggaggccgttttataggctgtaacaat
tatccgaactgtaccttttctctccctctgccccgaagcggacagatcatagttactgat
aaggtctgtgaagctcacggcctgcaccatatccgtataatcaattctggaaaacggccc
tgggaccttggctgtcctcagtgtaatttcatagaatggcagaaaacccagcaggaggaa
caggccaagcagcccaaaaaagaaaagcccaaatcaattcaggatctcgaaggtgtggga
aaagccaccgcaggaaaactggaagatgccggtattacaagcgtagaagctctggcagaa
gccgaccctgtagaacttgcaaaagcgataaagaccagtgtaaagagagtcaaaaactgg
cagatctcatgcaacggcacagtcacagtagaaagcaacagcacagctgagggcagtagc
acagttaagggtaactgtacagttgaagacgcatga
DBGET
integrated database retrieval system
