Methanosarcina barkeri MS: MSBRM_2911
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Entry
MSBRM_2911 CDS
T03838
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
mby
Methanosarcina barkeri MS
Pathway
mby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSBRM_2911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mby03019
]
MSBRM_2911
Messenger RNA biogenesis [BR:
mby03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSBRM_2911
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MSBRM_2911
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
ECR1_N_2
HypA
OB_RRP5_4th
S1
zf-C3HC4_3
Motif
Other DBs
NCBI-ProteinID:
AKB55909
UniProt:
A0A0E3QW88
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All DBs
Position
3808975..3809889
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AA seq
304 aa
AA seq
DB search
MTGPSEGKPVAENVTQIASESRDQFKGRSRDQFKTPREQVKNQPREQPREYKSQSRDHFR
GRPRDQFKGKSRAQSKDQFRGDQGKKRRFPYQKKGSRERSNMPEPGAPHETETPEEELEK
GGFVLPGELVGTTEEFKPGEGTNVSAGDIYSTATGTVIIDRKARVISVRPRTLTPNILKV
GDIVYGKITDVRESGAIVEVAGIEGKENREIVNVRLGDIHVSNVRDSYVKRLSDEFRHFD
IVKARVLDTERIRLTTAEDSLGVVKAYCSNCKGELVLEGKKLKCPVCNMTETRKISTEYG
KGVK
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
ttgactggcccgagtgaaggaaagccggttgctgaaaatgtaactcaaattgcttccgaa
agcagagaccagttcaaaggccgatcgagagatcagtttaaaaccccaagggaacaggtt
aaaaatcaaccaagagagcagcccagagaatataagagccaatcaagagatcacttcagg
ggacgccccagagatcagtttaaaggtaagtccagggctcagtcaaaggaccagttcaga
ggagaccagggcaagaaaagaagattcccttaccagaaaaaaggctccagggaaagatcg
aatatgcctgaacccggagctccccacgaaaccgagactcctgaagaagagcttgaaaaa
ggaggttttgtgcttcctggagagcttgtgggaacgactgaagagttcaagcctggggaa
ggaacaaacgtgtctgctggagatatttactctacagctactggcaccgtaattattgac
aggaaagcaagagtaatctcagtcaggccacgcacgctcactccgaatattcttaaagta
ggggatattgtctatggaaagataactgatgtgcgcgaatccggggcaatagtggaagtt
gcaggaattgaaggcaaagaaaacagggaaattgtcaatgtgcgtttgggagacatccat
gtatcgaacgtgcgggactcttacgttaagagactttcagacgagttcagacactttgat
atagtcaaggccagagttctcgacactgaaagaattcgccttacaacagctgaagattcc
ctaggagttgtaaaagcctactgttcaaactgcaaaggagaacttgtgcttgaagggaaa
aagcttaaatgccccgtctgcaatatgaccgaaactcgcaaaatctcaaccgagtacggg
aaaggggtaaaataa
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