Methylococcus capsulatus: MCA0195
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Entry
MCA0195 CDS
T00205
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mca
Methylococcus capsulatus
Brite
KEGG Orthology (KO) [BR:
mca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mca03016
]
MCA0195
Enzymes [BR:
mca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MCA0195
Transfer RNA biogenesis [BR:
mca03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MCA0195
Prokaryotic type
tRNA splicing ligases
MCA0195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AAU90689
UniProt:
Q60CB4
LinkDB
All DBs
Position
complement(203966..205396)
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AA seq
476 aa
AA seq
DB search
MNIDRLERLDACTWRLNPERGMRVPVILYGDEALIRAMDDKVLEQAANVAGLPGIVQASY
AMPDAHWGYGFPIGGVAAFDAGAGGVVSAGGVGFDVSCGVRTLLTGLKRPAIEPVKTLLA
DTLYADIPVGLGSHGKIRLDAQGLDAMLKGGAQWAVEQGWGEARDLTRIEEHGRMEGARP
ENVSARAKERQRAEMGTLGSGNHYLEVQEVTEIFDAGSAQTFGISEGDVVVSIHCGSRGL
GHQIGTEYLRLMQGAAKQHGIALPDRELACAPIESEVGQDYLGAMRAAINCALANRQILT
HLTRQVFARVLPAARLELLYDVSHNTCKFEEHLVEGKRRRLHVHRKGATRAYGPGHPDLP
PAFAETGQPVLIGGSMGTASYILAGTSGSETLSFASACHGAGRSMSRHQATRTWQGREVI
DQLAERGILIRSPSYRGVAEEAPGAYKDVHAVVQSSDRAGLARLVARLEPIICIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcgaccgtctcgaacgactcgacgcctgcacctggcgcctgaatccggaacgc
ggaatgcgcgtacccgtcattttgtacggcgacgaagcgctgatccgcgccatggacgac
aaggtactggaacaggccgccaacgtcgccggactgcctggcatcgtccaggccagttac
gcgatgcccgacgctcactggggctatggctttcccatcggcggcgtggcggctttcgat
gccggcgcgggcggcgtggtttcggccggcggcgtcggcttcgacgtttcctgcggcgtg
cgcaccctgctcaccggcctgaaacgccccgccatcgaaccggtgaaaaccttgctggcc
gataccctctacgccgacattccggtggggctcggcagccacggcaagatccgactggac
gcccagggtctcgatgcgatgctgaaaggcggcgcacaatgggcggtcgaacagggctgg
ggcgaggcgcgtgacctgacccgcatcgaggagcacggccgcatggagggcgcccggcct
gaaaacgtctcggcccgcgccaaggaacgccagcgcgcggagatgggcaccctcggctcg
ggcaatcactacctggaagtccaggaggtgaccgagattttcgacgcggggtcggctcaa
accttcggcatctcggagggcgacgtggtcgtcagcatccattgcggctcgcgcggcctg
ggtcaccagatcggcaccgaatacctgcgcctgatgcagggtgcggccaaacaacacggc
atcgccctgcccgaccgggaactggcctgcgcgcccatcgaatcggaagtcggccaggat
tacctcggtgccatgcgcgccgccatcaactgcgccctcgccaaccgccagatactcacc
cacctcacccggcaggttttcgcccgcgtgctgcccgcggcccggctggaactgctgtac
gacgtctcccacaacacctgcaagttcgaggaacacctcgtggaaggaaaacgccgccgg
ctccatgtccaccgcaagggcgcgacccgtgcttacgggcccggccatccggacctgccg
ccggcattcgccgaaaccggccaacccgtcctcatcggcggttccatgggcacggcatct
tacatcctggctggcacgtcagggagcgagacgctctccttcgcctcagcctgccacggt
gccggacgcagcatgagccgccaccaggcgacccggacctggcaggggcgggaagtgatc
gaccagctcgccgagcgcggcatcctcatccgtagcccctcctaccggggcgtcgccgaa
gaagcccccggcgcctacaaggacgtccatgccgtggtgcagtcctccgacagagccggg
ctagcacggctggtcgcccggctggaaccgatcatatgcatcaaaggatga
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