Methylococcus capsulatus: MCA0989
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Entry
MCA0989 CDS
T00205
Symbol
csdB
Name
(GenBank) selenocysteine lyase
KO
K11717
cysteine desulfurase / selenocysteine lyase [EC:
2.8.1.7
4.4.1.16
]
Organism
mca
Methylococcus capsulatus
Pathway
mca00450
Selenocompound metabolism
mca01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mca00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
MCA0989 (csdB)
Enzymes [BR:
mca01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.7 cysteine desulfurase
MCA0989 (csdB)
4. Lyases
4.4 Carbon-sulfur lyases
4.4.1 Carbon-sulfur lyases (only sub-subclass identified to date)
4.4.1.16 selenocysteine lyase
MCA0989 (csdB)
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Gene cluster
GFIT
Motif
Pfam:
Aminotran_5
DegT_DnrJ_EryC1
Cys_Met_Meta_PP
Beta_elim_lyase
SelA
FAM27
Motif
Other DBs
NCBI-ProteinID:
AAU92956
UniProt:
Q60A80
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All DBs
Position
complement(1034777..1036021)
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AA seq
414 aa
AA seq
DB search
MNTAPAAVPAFDVARIRTDFPILGQQVHGKPLVYLDNAATAQKPKAVLDCIAHVYGEDYA
NVHRGVHTLSQRATELFEGAREKVQRHLNARHSHEIVFTRGTTEAINLVAQSYGRPRFKA
GDEILITAMEHHSNIVPWQMLCEQTGAVLKVVPIDRTGTLELDRFEALLSNRTRLLAVAH
MSNALGTINPVETLIEQAHRRGVPVLVDGAQAIPHMAVDVQALDCDFYAFSGHKLYGPAG
IGILYGKEELLNKMPPYQGGGDMIRRVTFEKTEYNTLPYKFEAGTPSIVDAIALGAAIDY
VNGIGMETIAGHEQRLLAYATEQALRIPGLELFGQAAEKGAILSFTLHRIHPHDIGTILD
HLGIAIRAGHHCAMPVMDFFGIPATARASFGLYNTFEEVDALIAGIHKVIEVFG
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccgcccccgccgccgtcccggctttcgacgtagcccggatcaggacggacttc
ccgatcctcggacagcaggttcacggcaagccgctggtctatctggacaacgccgccacc
gcccagaaacccaaggcggtgctggactgcatcgcgcatgtgtacggggaggactacgcc
aacgtccaccgcggcgtacacaccctgagccagcgcgccacggagttgttcgagggggca
cgggaaaaggtgcagcgccacctcaacgcccgccattcgcacgagatcgtcttcacccgc
ggcaccaccgaggcgatcaacctggtcgcccagtcctacggacggccacgcttcaaggcg
ggggacgaaatcctcatcacggccatggagcatcattccaacatcgtgccctggcagatg
ctgtgcgagcagaccggcgccgtgctgaaggtcgtcccgatcgaccgcaccggcaccctg
gaactggaccggttcgaagccctgctgtcgaaccgtacccggctgctggcggtggcgcac
atgtcgaacgcgctgggcacgatcaacccggtggaaacgctgatcgaacaggcccatcgc
cgcggcgtgccggtgctggtcgacggcgcccaggcgataccgcacatggcggtggacgtg
caggcgctggactgcgatttctacgccttctccggccataagctgtatggccccgccggc
atcgggatcctgtacggcaaggaagagttgctgaacaagatgccgccctatcagggaggc
ggcgacatgatccgccgggtgaccttcgagaagaccgaatacaacaccctgccctacaag
ttcgaagccggcacgccgagcatcgtcgacgccatcgccctgggtgccgccatcgactat
gtgaacggcataggcatggaaaccatagccggacacgaacagcggctgctggcctacgcc
accgaacaggcgctacgcatcccgggcttagagctgttcggccaggccgccgagaagggt
gccatcctgtcgttcaccctgcaccgcatccacccccacgacatcggcacgatcctggat
cacctcggcatcgccatccgcgccgggcatcattgcgccatgccggtgatggactttttc
ggcattcccgcgacggcgcgggcgtcgttcgggctttacaacactttcgaagaggtagac
gcgttgatcgcaggcatccacaaggtcatcgaggtattcggctga
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