Methylococcus capsulatus: MCA1011
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Entry
MCA1011 CDS
T00205
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mca
Methylococcus capsulatus
Pathway
mca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCA1011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mca03019
]
MCA1011
Enzymes [BR:
mca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MCA1011
Messenger RNA biogenesis [BR:
mca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MCA1011
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AAU92914
UniProt:
Q60A60
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All DBs
Position
1060280..1061641
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AA seq
453 aa
AA seq
DB search
MSSDSNSAGPAFADLGLAQPLLRAVSEAGYVHPTPIQAQAIPLLLAGGDLLAAAQTGTGK
TAGFTLPILHRLLEKQAPRRPRRPRCLILAPTRELAAQVLESVEGYGKYVPLKATVMFGG
VGLNPQVRALAAGVDILVATPGRLLDHCGQNTVDLSAVEIFVLDEADRMLDMGFIRDIRR
ILGLLPKQRQNMLFSATFSDEIRTLADGLLNNPGYVEVARRNAASDLVDQTVHLVAQEHK
RDLLTHLIRRHDWRQVLVFTRTKHGANRLAEKLAEDGIPAAAIHGNKSQSARTRALADFK
DGTVPVLVATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGRAGSAVSLVAKE
ELKLLGSIERLIKRPIQRGTVEGFNPPSRPRIERRDDRSRRPQEVRDGGGRQSPPGQPKA
RAGLGSRSAARHAQKPQQRQAGNRLRSQGGKRG
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagattcgaattctgccggcccggcgtttgccgatctcgggctggctcagccc
cttttgcgcgccgtttccgaagccggttacgtccatcccacacccatccaggcccaggcg
atcccgcttctgctcgccggcggcgatctgctggcggcggcccagaccggaaccggcaag
accgcaggcttcaccttgccgattctgcacaggctgctggagaaacaagctccgcgccgg
ccgaggcgcccgcgctgtctcattctcgcgcccacccgcgagctggcggcgcaggtcctg
gaatcggtcgaaggctacggcaagtacgtccccctgaaagccacggtcatgtttggcggg
gtggggctcaacccccaggtccgtgctctcgcggccggcgtcgatatcctcgtcgccacg
ccgggccgcctgctcgatcattgcggacagaacaccgtcgatctttccgccgtggaaatc
ttcgtactggacgaggcggaccgcatgctggacatggggttcatccgcgacatccggcgg
attctgggactgctgccgaagcagcggcagaacatgctgttttcggccacgttttcggat
gaaatccgcacgctcgccgacggcttgctgaacaatccgggctacgtcgaggtggcgcgc
cgcaacgcggcttccgatctggtggaccagaccgtccatctggtcgcccaggaacacaag
cgcgatctgcttacccacttgatccgccggcacgactggcgtcaggtgctggtattcacc
cggaccaaacacggcgcgaaccggctggcggagaaactggccgaggatggcattcctgcc
gcggcgattcacggcaacaaaagccagtcggcgcgtacccgggcgctggcggatttcaag
gacggcacggtgccggtgctggtggctacggacatcgcggcacgcggtctggacatcgac
cagcttccccacgtggtgaacttcgaattaccgaacgtgccggaggactacgtccatcgg
atcggccgcaccgggcgtgccgggcgcgccggctctgccgtgtcgctggtagcgaaagag
gaactgaagctgctgggcagcatcgagcgtctgatcaaacgcccgatccagcggggaacg
gtggaaggtttcaacccgccgtcccgcccgcggatcgagcgtcgggacgaccgctcacgg
cggccgcaggaggtgcgggatggcggtggccgacagtctcctccgggccagcccaaggcg
cgggcaggtctggggtcccgcagcgctgcccggcatgcgcagaagccgcaacagcggcag
gcgggcaaccggctgcgcagccagggcggcaagcgcggataa
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