Methylococcus capsulatus: MCA1066
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Entry
MCA1066 CDS
T00205
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mca
Methylococcus capsulatus
Pathway
mca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MCA1066 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mca03021
]
MCA1066 (rpoB)
03400 DNA repair and recombination proteins [BR:
mca03400
]
MCA1066 (rpoB)
Enzymes [BR:
mca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MCA1066 (rpoB)
Transcription machinery [BR:
mca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MCA1066 (rpoB)
DNA repair and recombination proteins [BR:
mca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MCA1066 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
FabMG
Motif
Other DBs
NCBI-ProteinID:
AAU92668
UniProt:
Q60A06
LinkDB
All DBs
Position
1114712..1118788
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSFTEKKRIRKSFGKRQDVLEVPYLLATQVDSYRRFLQLDKQPAARSDEGLHAALKSV
FPIKSHSGNIVLEYVSYRLGDPVFDVKECQQRGTTYAAPLRVLVRLVVYDKDAPVGAKVV
RDIKEQEIYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFNA
RIIPYRGSWLDFEFDHKDCVYVRIDRRRKLPATVLLRALGYDNEQIIAEFFDTNRFLLSS
AGIQLELIPERLRGDIASFDIRLGDQIVVEKDHRITARHIRMLQKENVNLLDVPKDYLYG
KILAHNVVDTSTGELIAKVNQEITEDVYARLVAAAIPEIRTLYVNDLDRGPYISNTMRID
LTETQLDALVEIYRMMRPGEPPTKEAAQTLFENLFFSAERYDLSAVGRMKFNRRLGRTDP
TGPGVLENDDIIAVLKELINIRNGGGTVDDIDHLGNRRVRSVGEMVENQFRLGLVRVERA
VKERLSLPDADGLMPQEIINAKPVAASIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALG
PGGLARERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLAVYSRTNEYGFLETPYRKV
IDGRVTDQIEYLSAIEEGQYYIAQASASVDENGMLKDELVSCRHKDEFTLASRENINYMD
VSSKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRTEKPLVGTGMERIVARDSGV
AVVAKRGGTVEFVDASRIVVRVNDEETEAGVPGVDIYNLTKYTRSNQNTCINQRPLVKPG
DVVARNDVLADGPSTDMGELALGQNLLVAFMPWNGYNFEDSILISERVVQDDRFTTIHIE
EKTCVARDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVKAGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMDGTVIDVQVFTRDGVKKDERARQIEEAEIE
RVRKDLNDQLRIIEKDFYQRAEQMVLGKVADMGPGGLKRGATITREYLDSIKPAQWLEIR
LQDEDVNLQIEAIAEQIAQQREEIAKRLEEKRRKITMGDDLAPGVLKMVKVYLAVKRRIQ
PGDKMAGRHGNKGVISRIVPVEDMPYSADGTPVDIVLNPLGVPSRMNVGQVLETHLGWAA
KGVGLKIGRMLEAKAKIEEIRSFLTQVYNVSGRQEDIASLSDAEVLELAGNLQDGVPMAT
PVFDGATEEDIKAMLRLADLPESGQATLFDGRTGDVFDRPVTVGYMYMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM
YKNIVDGDHRMEAAMPESFNVLIKEIRSLGINIELEQD
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcgtttaccgagaaaaaacgaattcgcaagagtttcggaaagcgtcaggac
gtgctggaggtcccctatcttctggcgacacaggttgactcgtaccggcggtttttgcaa
ctcgacaagcagcccgccgcccggagcgacgaaggtctgcatgcggcgttgaagtcggtt
ttcccgatcaagagccattccggcaacatcgtactcgaatatgtgagttaccggctgggc
gacccggtgttcgacgtcaaggaatgccagcagcgtggaaccacctacgccgccccgctg
cgcgtgctcgtccgtctggtggtctacgacaaggatgcgccggtgggcgccaaggtcgtc
agagacatcaaggagcaggagatctacatgggcgaaattccgctcatgaccgacaacggc
acgttcgtcatcaacggtaccgagcgggtgatcgtttcccaactgcaccgttcgcccggc
gtatttttcgaccatgatcggggaaagacccattcttcgggaaagctgctgttcaatgcc
agaatcatcccctaccgcgggtcctggctggacttcgaattcgaccacaaggactgcgtt
tacgtccgtatcgacaggcgtcgcaagctgcccgccacggtgttgctgcgagccctgggc
tatgacaacgagcagatcatcgccgagtttttcgacaccaaccgtttcctgctctcatcc
gccggcattcagctggaactgatacccgagcggctgcgcggcgatatcgccagcttcgac
attcggcttggcgatcagatcgtggtcgagaaggaccaccggatcacggcgcgtcacatc
cggatgctgcaaaaggagaacgtgaacctcctcgacgtccccaaggactacctgtacggc
aagattcttgcccacaacgtcgtggatacttcgacgggcgaactgatcgccaaggtgaat
caggagatcacggaggatgtctatgcgcgtctcgtggctgcggccatccccgagatccgt
acgctctatgtgaacgatctcgaccgcggtccgtacatttccaataccatgcgcatcgat
ctgaccgagacgcagctggatgccctggtggaaatctaccggatgatgcggccgggcgaa
ccgccgaccaaggaggccgcccagaccctgttcgaaaatctgtttttctcggccgaacgc
tatgatctgtcggctgtcggccggatgaagttcaaccggcgcctggggcggaccgatcct
accggccccggcgtgctggaaaacgatgacatcatcgcggtgctgaaggaactgatcaac
atccgtaacggggggggcacggtcgacgacatcgaccatctgggtaaccgccgcgtccgg
tccgtgggggagatggtggagaatcagttcaggctcgggctggtccgggtcgaacgggcc
gtgaaggagcgtctgtcgctgcccgacgccgatggtctgatgccacaggagatcatcaac
gccaaaccggtggccgcttccatcaaggaattcttcggttcgagccagctttcgcagttc
atggaccagaacaatccgttgtcggaggtcactcacaagcgccgtgtctcggctctgggg
ccgggggggctggcgcgtgagcgcgccggcttcgaagtgcgcgacgtgcataccacccac
tacggccgtgtctgtccgatcgaaacgcccgaaggtccgaacatcggcctgatcaactcg
ctcgcggtctactcgcgcaccaacgaatacggctttctggagacgccgtatcgaaaggtg
atcgacggccgggtgaccgatcagatcgagtacctgtcggctatcgaggagggccagtac
tacattgctcaggccagcgcctcggtcgatgaaaacggcatgctcaaggatgaactggtg
tcgtgtcgccacaaggatgaattcaccctggcgtcgcgggaaaacatcaactacatggat
gtgtcgtccaaacagatcgtgtcggtcgcggcctcgctgatccccttcctcgaacacgat
gatgccaaccgcgccctgatgggctcgaacatgcagcggcaggccgtcccgacgctgcgt
acggagaagcctctggtgggcacgggcatggaacgcatcgtcgcccgcgattccggcgtg
gcggtcgtcgccaagcgcggtggcacggtcgagttcgtggacgccagccgcatcgtggtc
cgggtgaacgacgaggagaccgaggcgggggttccgggtgtggatatctacaacctgacc
aaatacacccgttccaaccagaacacctgtattaaccagaggccgttggttaagccgggc
gacgtcgtggcccgcaacgacgtgctggcggatggtccttcgaccgacatgggcgaactg
gcgctgggccagaatctgctggtcgcgttcatgccctggaacggttacaacttcgaagac
tcgatcctgatttcggaacgcgtggtgcaggacgaccgtttcacgaccatccacatcgag
gagaagacctgcgtcgctcgagacaccaaactggggcccgaggaaatcaccgccgacatt
ccgaacgttggggaggccgcgctgtccaagctggacgagtcgggtatcgtctacatcggc
gccgaggtcaaggccggcgacatcctggtgggcaaggtgacgcccaagggcgaaacccag
ctcaccccggaggagaagctgctgcgagcgatcttcggtgagaaggcctcggatgtgaag
gacacttcgctgcgcgtgccttcgggtatggacggcacggtcatagacgtgcaggtcttc
acccgcgacggcgtgaagaaggatgaacgcgcccgtcagatcgaggaagccgagattgag
agggttcgcaaggatctgaacgatcagctccgtatcatcgagaaggacttttaccagcgg
gccgagcagatggttctgggcaaggtcgccgacatggggccgggcggtctgaagcgcggc
gccaccatcacccgggaatacctggattcgatcaagcccgcccagtggctggagatccgg
ttgcaggacgaagacgtcaatcttcagatcgaagcgatcgccgagcagatcgcccagcag
cgcgaggaaatcgcgaagcggctcgaagagaagcgccgcaagatcaccatgggtgacgac
ctcgctccgggtgtgctcaagatggtaaaggtgtacctggccgtcaagcgccgtattcag
ccgggcgacaagatggccggccgccacgggaacaaaggtgtgatttcccgcatcgtaccg
gtggaagacatgccgtattcggctgacggtacgccggtcgacatcgtgttgaacccactg
ggcgtgccttcgcgcatgaacgtaggccaggtgctcgagacccatctcggctgggcggcc
aagggtgtgggcctgaagatcgggcggatgctggaggccaaggccaagatcgaggagatc
cggtctttcctcactcaggtgtacaacgtgagtggccgccaggaggacatcgccagtctg
agcgacgccgaggtgctggagctcgccggtaatctgcaggacggcgtgccgatggcgact
cccgtgttcgatggagccaccgaggaagacatcaaggccatgctgcggctggccgatctt
cccgaaagcggccaggcaactttgttcgacggacgtaccggcgacgtgttcgaccgtccg
gtgaccgtcggttacatgtacatgctcaaactcaatcatctggtcgacgacaagatgcac
gcacggtccaccggtccgtacagtctggtgacccagcagccgctgggcggcaaggcgcaa
ttcggtggacagcgtttcggcgaaatggaggtgtgggcgttggaggcctacggtgccgcc
tatactctgcaggagatgctgacggtgaaatctgacgacgtgaacggcaggaccaagatg
tacaagaacatcgtcgacggtgatcaccgtatggaagccgccatgcccgagtcgttcaac
gtcctgatcaaagagatccgctcgctcggaatcaacatcgagctcgagcaggactga
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integrated database retrieval system
