Methylococcus capsulatus: MCA1481
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Entry
MCA1481 CDS
T00205
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mca
Methylococcus capsulatus
Pathway
mca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCA1481 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mca03019
]
MCA1481 (rne)
03009 Ribosome biogenesis [BR:
mca03009
]
MCA1481 (rne)
Enzymes [BR:
mca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MCA1481 (rne)
Messenger RNA biogenesis [BR:
mca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MCA1481 (rne)
Ribosome biogenesis [BR:
mca03009
]
Prokaryotic type
rRNA processing factors
MCA1481 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AAU92503
UniProt:
Q608K9
LinkDB
All DBs
Position
1573769..1576426
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AA seq
885 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDFDIEIPAREQKKANIYKGLITRVEPSLEAAFVNF
GAERHGFLPFKEILPKYLGAGGEESVSRREIKDVLKEGQEVVVQVEKEERGTKGAALTTY
ISLAGSYLVLMPNNPKAGGISRRIEGDVRSDMKETLSQLHVPEDMGVIIRTAGGGKTVEE
LQWDLNYLLQLWEAIERSTREKPAPFLIFQESNVIIRALRDHLRGDIDEILVDNPSTFRL
VHSFLQQVMPQFINKARLYQDNVPLFSRYQIESQIETAYAREVPLPSGGAIVIDHTEALT
TIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMAARNQRAVE
NRLREAVRLDRARIQLGRISRFGLMEMSRQRLRPSLTETALLTCPRCKGQGTIRSVESLA
LSILRVLEEETMKKNTDRIIAQLPVESATYLLNEKRAAIQQIEVRHNVAITIIPNPHLET
PNYDIQRIRSGGAGGEEEIRKSSYQLIAEKSPETPKPTRTPSAAAEAPAVREFIPTAPQP
GGGDQRAQAQPGQPGGGLIKRFLNILTGQRIEDQPPSQEASQPSAGLPLPVPFVQTGKTA
GAQAETGAPPTDDSDHSGSQRRRDHRDGSRRGGNRRKHPAQRDETTDRRHGGPTSDTEAI
QASGTEEQPQTSTDQEERPKSEGGRGRRRDGRGQRRRASVQPIVEAPTEGIADETVVSEI
PPAGADLSDPVPAADSGETPDQGDAVGHEPAEGDRVDAELRLRTPRSRRGGVRRRGRGRR
DRRPAAPGEQGSEALEPVGIDWGDDTARGRGVEAEANPPGPAEIDDHRREPYSSPAERKE
TAESDEYRAPGLPPRAWQSPAADLAARDEHPDSPPPVERGAGSSD
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgatcaacgccacgcagcccgaggaattgcgggtcgcgctggtcgat
ggacaaaagctttatgacttcgacatagaaatccccgcgagggaacaaaaaaaggccaat
atctacaaaggactgattacccgcgtcgagcccagcctcgaggcggcgttcgtgaacttc
ggcgcggagcggcacggcttcctgccgttcaaggaaatcctgccgaaatatctcggcgcc
ggcggcgaagagtccgtctcccggcgggaaatcaaagacgttctcaaggaaggccaggaa
gtcgtcgttcaggtcgaaaaagaggagcgcggcaccaagggcgccgccctgaccacctac
atcagtctggccggcagctacctcgtgctcatgccgaacaaccccaaagcgggcggtatc
tcccgccgcatcgagggcgacgtccggtccgacatgaaggagacactgagtcagctccat
gttcccgaagacatgggcgtcatcatccgcacggcgggcggtggcaagacggtcgaagaa
ctgcagtgggacctcaattatctgttgcagctgtgggaagcgatcgaacgctcgacgcgg
gaaaaaccggcgccgttcctgattttccaggaaagcaacgtcatcatccgagctctgcgc
gaccatctgcggggtgacatcgacgaaatcctggtcgacaacccttcgactttcaggctg
gtgcacagcttcctgcaacaggtcatgccccagttcatcaacaaggcgcgcctgtatcag
gacaacgtacccctgttcagccgttaccagatcgaaagccagatcgaaacggcctatgcc
cgcgaagtgccgctgccctccggcggcgccatcgtcatcgaccataccgaggcgctgacg
accatcgatatcaattcggcgcgggccaccaagggcggcgatatcgaagaaaccgcgctg
aacaccaatctcgaggccgccgacgagatcgcccgccagttgcgcctgcgcgacctgggg
ggattgttcgtgatcgatttcatcgacatgatggcggcccgcaaccagcgtgcggtggag
aaccgcctgcgtgaggcagtgcgcctcgaccgggcgcgcatccagctcggtcggatttcc
cgtttcggcctcatggaaatgtcacgccagcgccttagaccttcgctcacggagacggcg
ctcctgacctgcccgcgctgcaaaggccaggggacgatacgcagcgtcgaatcgctggcc
ctgtccatcctccgcgtcctggaggaggaaacgatgaaaaagaacaccgaccggatcatc
gcccagctgccagtcgagtcggccacctatctgctgaacgagaaacgcgcggcgatccag
cagatcgaggtccggcacaatgtggccatcaccatcatccccaatccgcacctcgaaact
cccaactatgatatccagcggatccggagtggcggagccggtggggaagaagagatacgc
aagagtagttaccagctcattgccgagaaatcgcccgagactcccaagccgacacgaacg
cccagtgccgccgcggaggctccggcggtgcgggaattcattcccaccgccccgcagccg
ggcggcggcgaccagcgggcccaagctcagccaggccagcctggcggcgggctgatcaaa
cgcttcctcaacatcctgaccggtcaacgcatcgaggaccagcctccctctcaggaggcg
tctcagccgtccgccggactgccgttacccgtacctttcgtacagacgggcaagacggcc
ggcgcgcaggcggaaacgggagcccccccgaccgacgacagcgatcactccggaagccag
cggcgccgcgaccaccgggacggcagcaggcgggggggcaaccgccggaagcatcccgcc
cagcgggacgaaacgactgaccgacgccacggcgggccgacttcggacaccgaagccatc
caggcttccggaaccgaggaacagccccagacgtcgactgaccaagaggagcggcccaaa
tccgaggggggccgcggtcgccgccgggacggcagaggccagcgccggcgggcgtcggtt
cagccgatcgtggaagcgccgacggagggcatcgcggatgagacggtcgtctctgaaatt
cctccagcgggcgcggacttgagcgaccctgtgcctgccgccgattccggcgaaactccc
gaccagggagatgccgtcggccacgagccggccgaaggagacagggtggatgcggaactc
cgcctgcggactccacggtcgcggcggggcggcgtgagacggcgtggccgcggcaggcgg
gaccgtcgcccggcagcaccgggtgagcagggaagtgaagctctcgaaccggtcggcatc
gattggggcgacgacaccgccagaggccgcggcgtggaagccgaagccaatccgcccggc
ccggcggaaatcgacgatcaccggcgcgagccgtattcatccccggcggaacggaaagag
acggcggaatccgatgaataccgtgcgccgggtctgccgcccagagcatggcagtccccc
gcagcggacctcgccgcccgggacgagcaccccgattctccgccgccggtcgaacgcggc
gccggctcttcggattga
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