Methylococcus capsulatus: MCA1864
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Entry
MCA1864 CDS
T00205
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mca
Methylococcus capsulatus
Pathway
mca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MCA1864 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mca03400
]
MCA1864 (mfd)
Enzymes [BR:
mca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MCA1864 (mfd)
DNA repair and recombination proteins [BR:
mca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MCA1864 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AAA_30
AAA_22
DUF2585
ERCC3_RAD25_C
Methyltransf_8
Motif
Other DBs
NCBI-ProteinID:
AAU91891
UniProt:
Q606Z7
LinkDB
All DBs
Position
2002683..2006126
Genome browser
AA seq
1147 aa
AA seq
DB search
MATPLTPPLPTTRRQALCWSGLHGCSDSLAIASAIGASPGLFVVVTADAQSALRIEQEVK
TFLGGDAALLPFPDWEILPYDVFSPLPEITSQRLRTFYELSRIQHGLLITPVSTLMHRVA
PRTHTLANTFSIRTGSAVNIDQTRQTLESVGYQCVSQVYQHGEFAIRGSILDLYPMGSET
PYRIELFDDEVETIRTFDPESQRSIEKVEDIELFPAREFPFDEAAIKKFRQNFRVEFPDA
VSRSVLYQDVSKGIAVGGIEYYIPLFVERMDTLFDYLPGDATLILHGDVEQAAAAYYAEA
ASRHDQRRHNLDRPPLPPARLFLEPEALTSSLASFSRVMIPAADAAPAAAVKFDCAPPPA
LHPETKTQPPYEPLQCFIGEFAGKILLVAESAGHRETLAANLTKYRIRPRIVESWADFLA
VPDPLCLMVAALDHGLVISDPPLAIVTEAQLSGDKAQQRRRRQRTPSKDFGQFLRSLEEL
EIGAPVVHREHGVGRYLGLQRIDTGGVESEFLTIRYANDDKLYVPVSALGMVSRYAGADP
EHAPLHRLGSEQWAKARRKALEQVRDVAAELLDIHARRAAASGRSFATLTEEYLSFAAQF
PFEETPDQETAIQDVIRDLAAPRPMDRVVCGDVGFGKTEVAMRAAFIAAQNGRQVAVLVP
TTLLAQQHYKNFCDRFADWPMRIDVLSRFVSKKDQAQTIADIGDGKVDIVIGTHRLLQKD
IRFKDLGLVIIDEEHRFGVAHKEHFKKLRSEVDFLALTATPIPRTLDMALSGLREISVIA
TPPPHRHVIRTFVTEWDDTLVQEAITREIKRGGQVYFVHNKIETQPRLAERLEKLVPGIR
TRIAHGQMPERELENIMLDFYHQRFNVLLCTTIVESGIDVPSANTILIDRADTFGLAQLH
QLRGRVGRSHHRAYAYLLVPPKKAMTADAVKRLEAIEAAGELGAGFLLSSQDLEIRGAGE
LLGEEQSGQIQEIGFTLYTELLEKAVNALKSGKQPELETDHLAGTEVDLQCAALIPEEYL
PDVHTRLVLYKRIANARSDDELRELQIEMIDRFGLLPEATKQLFAVSALKNEAAKLGIAK
IEAGATGGRLIFEAHPAIDPAAIILLIQKEAATYKLDGPDKLRFIAKLPTPAERVRFVEA
LLDRLKA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
ttggccacgcctttgaccccccctttgcctaccacccgccgccaggccctgtgctggagc
gggctgcacggttgcagcgattccctcgcgatcgcctcggcgatcggtgcctcacccggc
ttgttcgtcgtcgtcaccgccgatgcccagagcgctttacgcatcgaacaggaggtgaag
acatttctcggtggggatgcggcgctcctcccattcccggactgggaaatcctcccctac
gacgtgttttccccgctgcctgaaatcacgtcgcagcggctgcggaccttttatgagcta
tcccgcatccaacatggcctgctcatcacccctgtatccacgctgatgcatcgggtagct
ccgcggacccacaccctggccaatacgttttccattcgcaccggcagcgctgtgaatatc
gatcagacccggcagacactcgaaagcgtaggctaccagtgcgtctcgcaggtataccag
catggcgaattcgcgatccggggctcgatactcgacctttatcccatggggagcgagaca
ccttatcgcatcgagctgttcgacgacgaggtggaaacgatccgtaccttcgatccggaa
agccagcgctcgatcgaaaaagtggaagacatcgagcttttccctgcccgcgaattccct
ttcgacgaggctgccattaaaaagttccggcagaatttccgggtcgaattcccggatgcg
gtgagtcgcagcgtcctgtatcaggatgtcagcaagggaatcgccgtcggggggatcgaa
tactacatacccctgttcgtggaacggatggatacgttgttcgattacctgccgggcgat
gcgaccctgatattgcacggcgatgtcgaacaggcggccgccgcttactacgccgaggcc
gccagccgtcatgaccagcgccgccacaacctggaccgtccgcccctgccaccggcccgc
ctgtttctggaacccgaagcgctgacatccagcctcgcatccttcagccgcgtcatgatc
ccggctgcggacgccgcccccgccgccgcggtgaaattcgactgcgcgccgccgccggca
ctgcatccggaaaccaagacccagcctccctacgaaccgctgcaatgcttcatcggggag
tttgccggaaaaatcctgctggtcgcggaatccgcgggccaccgcgagaccctcgcggcg
aacctcaccaagtaccggatccgtccacggatcgtggagagctgggcggacttccttgcg
gtgccggacccgctgtgcctgatggtcgccgccctcgaccatggcctggtcatttccgat
cctcccctggcgatcgtgaccgaagcccagctctcgggcgacaaggcccagcaacgcagg
cgccggcaacgcacgccatccaaggatttcggccaattcctacggagcctggaagaactg
gagatcggcgcgccggtggtgcatcgcgaacacggcgttggccgctatctcggcctgcag
cggatcgataccggcggcgtggagtcggaattcctgacgatccgctacgccaacgacgac
aagctctacgttcccgtttcggccctcggcatggtcagccgctacgccggcgccgacccg
gaacacgcgccgctgcaccgcctgggcagcgaacaatgggccaaggcgcgccgcaaggca
ctggaacaggtccgcgacgtcgccgccgaactgctggacattcatgccaggcgagccgcg
gcgagcgggcggagtttcgccacgctgaccgaagaatacctgagcttcgccgctcagttc
ccgttcgaggaaacacccgaccaggaaaccgcgatccaggacgtcatccgcgacctcgcc
gccccccgtccgatggaccgggtggtctgcggcgacgtcggcttcggcaaaacggaagtc
gcgatgcgggccgccttcatcgccgcccagaacggccgccaggtcgcagtgctggtaccg
accaccctgctggcccagcagcactacaagaacttctgtgaccgcttcgccgactggccg
atgcggatcgacgtgctgtcgcgcttcgtctccaagaaagaccaagcccagaccatcgcg
gacatcggcgacggcaaggtggacatcgtcataggcacccaccggctactgcagaaggac
atccgcttcaaggacttgggactggtcatcatcgacgaggagcaccgcttcggggtcgcg
cacaaggagcatttcaaaaagctgcgcagcgaagtggatttcctggcgctgaccgccacc
cccatcccccgcaccctggacatggccctgagcggcctgcgcgagatttccgtcatcgcc
actccgccgccccaccggcacgtcatccgcactttcgtcaccgaatgggacgacacgctg
gtgcaggaagccatcacgcgcgagatcaagcgcggcggccaggtctatttcgtgcacaac
aagatcgagactcagcccagactggcggagcggctggaaaagctggtgcccggtatccgc
acccgcatcgcccacggccagatgccggagcgggaattggaaaacatcatgctggacttc
taccatcagcgcttcaacgtgctgctctgcaccaccatcgtggaaagtggcatcgacgtg
cccagtgccaacacgatactgatcgaccgcgcggacaccttcggtctcgcccagctccac
cagctgcggggacgggtcggacgctcgcatcaccgcgcctatgcctatctgctggtaccg
ccgaagaaggccatgaccgccgacgccgtgaagcgcctggaggccatcgaggcggcaggc
gaactcggcgccggtttcctgctgtcctctcaggatctggagatccgcggtgccggcgag
ctgctcggcgaggagcagagcggccagatccaggaaatcggcttcaccttatataccgaa
ctgctggaaaaggccgtcaacgcgctgaaatccggcaaacagccagaactggaaaccgat
cacctcgccggtaccgaagtcgacctgcaatgcgcggcgctgatcccggaggaatatctc
cccgacgtgcacacccgcctggtgctgtacaagcgcatcgccaacgcccgcagcgacgac
gagctgcgcgagctgcagatcgagatgatcgaccgcttcggcctgctgccggaggcgacc
aagcagctgttcgcggtcagcgcgctgaagaacgaggccgccaagctgggcatcgccaag
atcgaagccggggcaaccggcggacggttgatattcgaagcccacccggccatcgacccg
gccgcgatcatcctgctgatccagaaggaggccgccacctacaagctggacggcccggac
aaactgcggttcatcgccaagctccccaccccggcggagcgggtccggttcgtcgaggcg
ctgctggaccggctgaaggcatga
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integrated database retrieval system
