Methylococcus capsulatus: MCA2378
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Entry
MCA2378 CDS
T00205
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mca
Methylococcus capsulatus
Brite
KEGG Orthology (KO) [BR:
mca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mca03016
]
MCA2378 (rnd)
Enzymes [BR:
mca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
MCA2378 (rnd)
Transfer RNA biogenesis [BR:
mca03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MCA2378 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AAU91577
UniProt:
Q605A6
LinkDB
All DBs
Position
2558241..2559407
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AA seq
388 aa
AA seq
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MPATMPPPINYIDSPAELAAFCRSIGGSPWIAVDTEFMRDKTYYPKFCLLQIANGTQAAC
IDPLAIEDLREVECLLFNRAITKVFHAARQDLEIFFHRFRAVPAPIFDTQLAAPLVGHPE
QVGYASLVSAMLGVTVDKEHTRTDWSQRPLSAAQKEYAANDVIHLAALYPRMREQLERLG
RYAWLVDEFAALEEPDLYVNRPEDAWQRIGGLDRLKPEQFALAVRLAAWRENTAQQNDLP
RNWILRDEALLEIALRRPRNRDALQALRGIDSRMVQRYGDAMIALVQDAGSGQAVPPQPR
RGQRRSAQTEAILDAMSALVRLRCIEHTINPAVVASRKDLEELLESPDGAKVLHGWRRAL
VGNDLRAFLAGKAMLRTKGGRLTFDDCE
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcaaccatgcccccgcccatcaactatatcgactcacccgccgagcttgcggca
ttctgccggtccatcggtggttctccctggatcgcagtcgataccgaattcatgcgtgac
aagacttattatccgaagttctgcctgctccagattgccaatggcactcaggccgcctgc
atcgatcccctcgccatcgaggatctgcgggaagtcgagtgtctgctgttcaatcgggcg
atcaccaaggtgtttcatgccgcgagacaggatctggagattttcttccaccgattccgg
gccgtcccagcgccgatattcgacacccaactggcagcccccctggtcggccatcccgag
caagttggctatgccagcctcgtatcggccatgcttggagtgactgtcgacaaggagcac
acccgcaccgattggagccagcgtcctctctcggccgcccagaaggaatacgcggccaac
gacgtgatccacctcgcggccctgtatccgaggatgcgggaacaactggaacggctggga
cgctatgcctggctggtggacgagttcgcggcgctggaggagccagacctctacgtaaac
cgtccggaggacgcgtggcagcgcatcggcgggctggaccgcctgaaacccgagcagttc
gcgttggcagtccgcctcgccgcctggcgggagaacaccgcccagcagaacgatctgccg
cgcaactggatacttcgcgacgaggccctgctggagatcgcgctgagaagaccccgtaac
cgggatgctctgcaagctctgagaggaatcgattcgcgcatggtacagcgatacggcgat
gcgatgatcgccctcgtacaggacgccgggagtggccaggccgtgccgccacaaccccgc
cggggtcagcgccgcagcgctcagaccgaggccatcctcgatgcgatgtcggccctcgtc
cgcctgcgctgcatcgagcacaccatcaaccccgccgtcgtggccagccgcaaggatctc
gaagagctgctggaatcgcccgacggcgccaaagtcctgcacggatggcggcgcgccctg
gtgggaaatgacctgcgagcttttctggcggggaaggcgatgctgcgcacgaagggcggc
cgactcacattcgacgactgtgaataa
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