Mangrovimonas cancribranchiae: R3L15_07165
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Entry
R3L15_07165 CDS
T10204
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mcaa Mangrovimonas cancribranchiae
Brite
KEGG Orthology (KO) [BR:
mcaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mcaa03009
]
R3L15_07165 (rlmD)
Enzymes [BR:
mcaa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
R3L15_07165 (rlmD)
Ribosome biogenesis [BR:
mcaa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
R3L15_07165 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
MTS
Methyltransf_32
PrmA
Cons_hypoth95
Methyltransf_12
N6_N4_Mtase
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_11
UPF0020
Ubie_methyltran
FtsJ
Methyltransf_4
mRNA_G-N7_MeTrfase
PCMT
NpmA
Methyltransf_18
Motif
Other DBs
NCBI-ProteinID:
WXA11918
UniProt:
A0AAU6P3F5
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All DBs
Position
1606289..1607743
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AA seq
484 aa
AA seq
DB search
MPRRERNKFVKRGQILNLKIEDYAFGGKGIARLKNEHGEFIVFVPNTLPGQLVKAQVKKS
SKKYAECKLIDVLQSSPDEVEVPYQDIPGAPYIKLPIDLQHKYKKESTLSLFKKIGKVDN
IENYFDAFISSPNVFHYRNKMEYGFSAIGYDKTKQTDVDEFTLGFKRRGTWWMGENLEKD
SGLFDEAVETHLKTIRHYCEKTGLPPWHAPRKTGFFRYFVVRKSHKTNALLFNLVTTSHD
LSKFDLTAFAEFLVSLFGDRLAGLLHTINDEIGDRTIATSGSIKLVYGKDKIVEELLGLQ
FEISMKSFFQTNPKSAEKLYSKVVDYALEDREAVDNSVVLDLFCGTGTIGQIIASKANNT
KIIGVDIVASAIEDAKKNAQRNGIEGLQFYAADVGKFLTEHPQYKNNIKTIILDPARAGI
TPKTLKKIINLNAKRLVYVSCNPATQARDIEQLGHANYKIKKLSLVDQFPHTAHIETVVL
LERR
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgaagagaacgaaataaatttgtaaaacgcggacaaatactaaatttaaaaata
gaagactatgcctttggtggaaaaggtatagcgcgtcttaaaaacgaacatggcgagttt
attgtatttgtacccaatacacttccaggtcagcttgtaaaagctcaggttaaaaagtct
agtaaaaagtatgctgaatgtaaacttattgatgttttacagtcatcacccgatgaagtt
gaagtcccctaccaagacatacctggcgcaccttacataaagttgcctattgatttacaa
cataaatataaaaaggaaagtaccctttcgctgtttaaaaaaattggtaaagtagataat
attgagaactattttgatgcgtttattagctctccaaatgtgtttcattacagaaacaaa
atggaatatggtttttcggctattggatatgacaaaaccaaacagaccgatgtagatgag
tttaccttaggatttaaaaggcgtggtacttggtggatgggtgaaaacctagaaaaagat
tctggcctttttgacgaagcggtagaaacccatttaaaaaccataagacattactgtgaa
aaaacagggttaccaccatggcatgcacccagaaaaacaggttttttcaggtattttgtt
gtaagaaaatcccacaaaaccaatgccttgttatttaatttagtgaccacatctcacgac
ttatcaaaatttgatttaactgcttttgcagagtttttagtctctctatttggagataga
ttagcaggcttattacatactattaacgatgaaattggagatcgtactattgctacttca
gggagtataaaactagtctatggaaaagataaaattgtcgaggaattattagggttacaa
tttgaaattagcatgaaaagtttctttcaaactaatccaaaatctgccgaaaaattatat
tcaaaagttgttgattatgctcttgaagatagagaagctgtagataacagtgttgtttta
gatttattttgtggtacaggaactataggtcaaattatagcttcaaaagcaaataataca
aaaataataggtgtagacattgttgcatcggcaatagaagatgccaaaaaaaatgcacaa
cgtaatggcattgaaggcttgcaattttatgctgccgatgttgggaaatttttaaccgag
catccacagtacaaaaacaatattaaaaccattattttggaccccgcaagagctggtatt
acacctaaaacgcttaaaaaaatcataaacctaaatgcaaaacgtttggtttatgtatct
tgcaatccagcaacccaagctagagacattgaacaacttggacacgccaattacaagata
aaaaaactaagtttagtcgatcaatttccacatacagcgcacatagaaactgttgtactt
ttggaaagaagataa
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