Mangrovimonas cancribranchiae: R3L15_12175
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Entry
R3L15_12175 CDS
T10204
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mcaa Mangrovimonas cancribranchiae
Pathway
mcaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R3L15_12175 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcaa03400
]
R3L15_12175 (mfd)
Enzymes [BR:
mcaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R3L15_12175 (mfd)
DNA repair and recombination proteins [BR:
mcaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R3L15_12175 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WXA12867
UniProt:
A0AAU6NWE8
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All DBs
Position
2646985..2650323
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AA seq
1112 aa
AA seq
DB search
MSKSTLSQTFAQTLQTQNLQTAIAQSQTRTHLKGLVGSSLSFVLSESFKNTDKPFLLVFN
DKEEAAFYLNDLELLLNDKDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAI
IVTYPDALFEQVVTRRELERNTLKISVNDNLSIDFVNEVLFDYKFKRVDFVTEPGEFSVR
GGIVDVFSFSHDEPYRIEFFGDEVDSIRTFDVETQLSTDQVKKISIIPNVANKLMEESRQ
SFLKYLAQKTVVFLNHSELLFSRVDSLFQKAEDTFETLSKDIKHAQPEELFCNSTMLKKQ
LLDFTLVEFGQQALFNPEDVITFNTSPQPAFNKQFNLLIENLNLHHNRGYTNYIACVSEQ
QAKRFHDIFDDVEENVHYQTVVLSLYQGFIDHENKITCYTDHQIFERYHKFHLKNGYAKK
QAITLKELTNLDIGDYVTHIDHGIGRFGGLQKIDVEGKKQEAIKLIYGERDILYLSIHSL
HKITKFNGKDGKPPKVYKLGSKAWKTLKQKTKKKVKEIAFNLIKLYAKRKLEKGYQYNPD
SYMQHELEASFLYEDTPDQSSATADIKADMESERPMDRLVCGDVGFGKTEVAIRAAFKAV
DNGKQVAVLVPTTILAYQHYRTFKQRLKDFPVTVDYVNRFRTAKEKRITLENLESGAVDI
IIGTHQLANKTVKFKDLGLLIVDEEQKFGVSVKEKLRTLKENIDVLTLTATPIPRTLQFS
LMAARDLSTISTPPPNRYPIESHVIRFSEETIRDAVSYEIQRGGQIFFIHNRIENIKEVA
GLLQRLAPDAKIAIGHGQMDGKKLEKLMLGFMNGEFDILVSTTIVESGLDVPNANTIFIN
NANNFGLSDLHQMRGRVGRSNKKAFCYFITPEYSAMTEDARKRITALAQFTELGSGFNIA
MKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILNEAIEELKEKEFKELYKDDNKPKQYVK
DVTIDTDFEILFPDDYVNNITERLNLYTKLNELKTEKDLKSFEKDIVDRFGELPNQVIDL
FNSVRIKWLAEKIGLEKVVMKKGKLIGYFITNQQSEFYQSNAFTKVLKFVQTHPQSCKMK
EKQTRNGLRLLLTFDKITSVNKAMEALKPIVA
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaatctaccctctcgcaaacctttgcacagactttgcaaacgcaaaatctgcaa
actgctattgcccaatcccaaacgagaacacacttaaaaggtcttgtaggctcgtcgcta
tcttttgtactttcagaatcgtttaaaaacacagataagccattcttacttgtatttaat
gacaaagaagaagccgctttttatttaaacgatttagaattgcttcttaacgacaaggat
gtcttattttatcctggaagttaccgcaggccttatcaaattgaagaaaccgataacgct
aacgtgcttcttcgcgccgaagttttaaatcgtattaactccagaaaaaaaccggctatt
attgtaacctatccagacgctttatttgagcaagtggttactagacgtgagctggaacgc
aataccttaaaaatttcagttaacgataatctatctattgattttgtaaacgaagtcttg
ttcgattataagtttaaacgtgtagattttgtaaccgaacctggagagttttcggtacgt
ggtggtattgtagatgtattttcgttttcgcacgacgaaccgtatcgtattgagtttttt
ggggatgaagtcgatagtattcgcacctttgatgttgaaacacaactctctacagaccaa
gttaagaaaattagtattattcctaatgtggccaataagcttatggaagaaagccgccag
agctttctaaaatatttggcacaaaaaacggtggtgtttttaaaccattcggagctatta
ttttctagggttgatagtttatttcaaaaagcagaagacactttcgaaaccctttcaaaa
gacattaaacacgcacaacccgaagaattattctgcaattcaactatgttgaaaaagcag
ttattagactttactttagttgaatttgggcaacaagcactttttaatccagaagatgtt
attacgtttaacacctcgccacaaccagctttcaacaagcaatttaatttacttattgaa
aacctcaacctgcatcataatagaggttacaccaattatattgcttgtgtaagtgagcaa
caagccaaacgatttcatgatatttttgacgatgttgaagaaaacgttcattatcaaact
gtggtgttatctttatatcaaggatttatagatcatgaaaacaaaataacctgttacacc
gatcatcaaatttttgaacgttatcataaatttcaccttaaaaatggctacgctaaaaaa
caagccattacacttaaggagttaactaacttagatattggtgattacgttactcatatc
gatcatggtattgggcgttttggtggacttcaaaaaatagatgtagaaggcaagaaacaa
gaagccataaaacttatttacggcgaacgggacattttatatttaagtatccactcgcta
cataaaatcaccaaatttaacggcaaagatggcaaaccgcctaaagtatataaattaggt
agcaaagcatggaaaaccttaaagcaaaaaacaaagaaaaaggttaaagaaattgccttt
aacttgattaaactttatgccaaacgtaaactagaaaaggggtatcaatacaatccagac
agttatatgcaacacgagttggaagcctcttttttatacgaagacacgccagaccaaagc
tctgctactgccgatataaaagctgatatggaaagcgaacgccccatggacagattggtt
tgtggcgatgtaggatttggtaaaaccgaagtcgctattcgcgcagcttttaaagcggtt
gacaatggtaaacaagttgctgttttagtccctactactattttggcttaccaacattat
cgtacatttaaacaacgtttaaaagattttcctgtaacggtagattatgtaaaccgcttt
agaaccgccaaagaaaaacgtattaccttagaaaatcttgaaagtggtgctgtagatatt
attattggaacccatcaattggctaacaaaactgtcaagtttaaagatttaggcttatta
attgtagatgaagagcaaaaatttggtgtttcggtaaaagaaaagctacgtactttaaaa
gaaaatatcgatgtcttaacactaaccgcaacccctattccgcgtacattacagtttagt
ttaatggctgctcgagatttatcaacaatctcaacgccaccaccaaatcgttatcctata
gaaagtcatgttattagatttagtgaagaaaccattcgcgatgctgtaagctatgaaata
caacgtggcggacaaattttctttattcataatagaattgaaaatattaaagaagttgct
ggactcttacaacgtttagccccagacgccaaaattgctattggccatgggcaaatggat
ggaaaaaaactagaaaaattaatgctaggattcatgaatggtgaattcgacatcttagtt
agtacaactattgtagaaagcggtcttgatgtgcctaatgctaacaccatatttattaac
aacgccaacaactttggattaagcgatttacaccaaatgcgtggtcgtgttgggcgtagt
aacaaaaaggcattttgttattttattacgcctgaatattctgccatgacagaagatgca
agaaaacgtattacagctttagcacaatttacagagcttggcagtgggtttaatatagcg
atgaaagatttagaaattcgtggtgctggcgatttattgggaggcgaacaaagcggattt
attaatgatattggtttcgatacgtatcaaaaaatccttaacgaagccatagaagaatta
aaagaaaaagaatttaaagagctttacaaagacgataataaacctaagcaatatgttaaa
gacgttaccatagataccgacttcgaaattttattcccagacgactatgttaacaatatt
actgaacgcttaaatttatacaccaaactaaacgagcttaaaaccgaaaaggatttaaaa
agctttgaaaaagatattgttgatcgctttggcgaacttccaaaccaagttatcgattta
tttaatagcgttcgcataaaatggttagctgaaaaaataggcttagaaaaagtcgttatg
aaaaaaggcaagcttattgggtattttataactaatcaacaaagtgaattttaccaaagc
aacgcctttaccaaagtgctaaagtttgttcaaacacatccgcaaagttgtaaaatgaaa
gaaaaacaaacacgtaatggattacgattattacttacttttgataaaattacatcggta
aacaaagcaatggaagctttaaaaccaattgtggcttaa
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