Micromonospora carbonacea: HXZ27_18425
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Entry
HXZ27_18425 CDS
T06722
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mcab
Micromonospora carbonacea
Pathway
mcab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HXZ27_18425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcab03019
]
HXZ27_18425
03009 Ribosome biogenesis [BR:
mcab03009
]
HXZ27_18425
Enzymes [BR:
mcab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HXZ27_18425
Messenger RNA biogenesis [BR:
mcab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HXZ27_18425
Ribosome biogenesis [BR:
mcab03009
]
Prokaryotic type
rRNA helicases
HXZ27_18425
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Motif
Other DBs
NCBI-ProteinID:
QLD25944
UniProt:
A0A7H8XMA2
LinkDB
All DBs
Position
complement(4503948..4505654)
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AA seq
568 aa
AA seq
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MSSAPASTEHTIPADEATAFADLGLRAELLGALSALGYEEPTPIQREAIPPLLAGRDLLG
QAATGTGKTAAFALPLLQRMPDGRTGGEPVALVLVPTRELAVQVSEAFHRYGKDLGARVL
PIYGGQPIGRQLRALDLGVDVVVATPGRALDHIARGTLRLGGLATVVLDEADEMLDMGFA
EDIEAILEHAPQQRQTVLFSATMPSRIDGMARQHLSDPVRIQIGREQPVAGETPRVRQSA
YIVARAHKPAALGRVLDVESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQR
DRVMGRLRAGTADLLVATDVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGV
AITLAEPREHRMLKTIERVTGQRIAIDKIPTVADLRTRRLELTQAALRESLLEDDLEPFR
VIVESLSDEFDMMEVALAAVKLAHEAASPGSDDDEEEIPQVAVRPPREGRPGQEGRGGER
RPGRPRSGGTTQVFIGLGRRAGVRPQDLVGAITGETRVSGRDIGSIEIADRFSLVEVPIA
VVDEVIAGLRNSTIKGRKTTVRRDRDRP
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgagttccgcacccgcatcgaccgaacacaccatccccgccgacgaggccaccgccttc
gcggatctcgggctgcgtgccgagctgctcggcgcgctgtccgcgctcggctacgaggag
ccgaccccgatccagcgggaggcgatcccgcccctgctggccggcagggacctgctcggt
caggcggccaccggcaccggcaagacggccgcgttcgcgctgccgctgctgcaacggatg
ccggacgggcggaccggcggggagccggtggccctggtgctggtgcccacccgggagctg
gcggtgcaggtgtcggaggcgttccaccgctacggcaaggacctgggcgcgcgggtgctg
ccgatctacggcggccagccgatcggccggcagctgcgcgccctggacctgggggtggac
gtggtggtggcgaccccgggccgggcgctggaccacatcgcccggggcaccctgcggctg
ggcggcctggccacggtggtgctcgacgaggccgacgagatgctcgacatgggcttcgcc
gaggacatcgaggcgatcctggagcacgccccgcagcagcggcagacggtgctgttctcg
gcgaccatgccgtcgcgcatcgacgggatggcccggcagcacctgagcgacccggtgcgc
atccagatcggccgggagcagccggtggccggcgagacgccccgggtgcggcagagcgcg
tacatcgtggcgcgggcgcacaagccggcggcgctgggccgggtgctggacgtggagtcg
ccgaccgcggcgatcgtcttctgccgcagccgggaggaggtcgaccggctcaccgagacg
atgaacggccggggctaccgcgccgaggcgctgcacggcgggatgagccaggagcagcgg
gaccgggtgatgggccggctgcgcgccggcacggccgacctgctggtggccaccgacgtg
gcggcccgggggctggacgtcgagcagctcacccacgtggtcaactacgacgtgccgtcg
gccccggagtcgtacgtgcaccgcatcggccgggtggggcgggcgggccgggagggggtg
gcgatcaccctcgccgagccgcgcgagcaccggatgctcaagaccatcgagcgggtgacc
ggccaacgcatcgccatcgacaagatccccacggtggccgacctgcgcacccggcggctg
gagctgacccaggcggcgctgcgggagagcctgctggaggacgacctggagccgttccgg
gtcatcgtggagtcgctgtcggacgagttcgacatgatggaggtggcgctcgcggcggtg
aagctcgcccacgaggccgcctcgccgggctcggacgacgacgaggaggagatcccgcag
gtcgcggtccggccgccgcgcgaggggcgtcccgggcaggaggggcgcggcggcgagcgg
cggcccggccggccccgctccgggggcaccacgcaggtgttcatcgggctcggccggcgc
gccggggtgcgcccgcaggacctggtcggcgcgatcaccggggagacccgggtcagcggg
cgggacatcggctcgatcgagatcgccgaccggttctcgctggtcgaggtgccgatcgcc
gtggtggacgaggtgatcgccgggctgcgcaacagcacgatcaagggccgcaagacgacg
gtacgccgcgaccgcgaccgcccctga
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