Micromonospora carbonacea: HXZ27_24785
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Entry
HXZ27_24785 CDS
T06722
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mcab
Micromonospora carbonacea
Pathway
mcab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HXZ27_24785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcab03019
]
HXZ27_24785
03009 Ribosome biogenesis [BR:
mcab03009
]
HXZ27_24785
Enzymes [BR:
mcab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HXZ27_24785
Messenger RNA biogenesis [BR:
mcab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HXZ27_24785
Ribosome biogenesis [BR:
mcab03009
]
Prokaryotic type
rRNA processing factors
HXZ27_24785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
QLD27029
UniProt:
A0A7H8XS56
LinkDB
All DBs
Position
complement(5971804..5975112)
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AA seq
1102 aa
AA seq
DB search
MLENEPEGGERTGSQPAGETADRTTDTGRASGDTVTGTADLTAGGPTAEGAAPAGGPTAA
QGEAAGAAAAEAPAPPPRKRATRRRATPLNQPEQTEAPVEASTSAGSASGEAPQAEVLAP
VAGELEEMPKTPRRRRKATTAKAAEEPIVVAAAEEAGAEVVPPVKVTRTRRRKATAPPVE
APAAEPVAGEAAVAGEGPAEQPTPAVAEPAVAQPPVAAAAEPDAGAAGGAPDQPPAGATD
ADQSAASGKPASGRATAGRGRRRSSGAENRSGEVPPGVAVPGVAEPPSGVAEPAEAVEPA
AVVAPAEVARAAEPVAADEPAEPRTRRRRAALSAPTVLFMAPQPDELPVARVVVPAPVEP
EAVEEQPEPSRRRRRARREAEPVEQAEVPEVEEEPAAEAEEAEAADDEEDEETAARRRRR
RGRRGRGRGKGGADEADDEDAEEAAQAEEPEAEGDEDEGEGETDEGGDGLTRRRRRRRRR
GAGDTDGGADDGVPTVVKIREPRKAVDEVQGVSGSTRLEAKRQRRRDGREQRRTRPPILS
ESEFLARREAVDRVMAVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVL
PSMEAAFVDIGRGRNAVLYAGEVNWDTTGLEGRARSIEQALRSGDSVLVQVTKDPIGHKG
ARLTSHIALSGRHLVYVPNGNASGISRKLPDTERKRLRDALKKLVPDGAGVIVRTAAEGA
SEDELARDVKRLQAQWEDIQAKAASGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGDE
SYGMVESYLSHVSPDLVDRVRRHAGAADVFATYRIDEQILKGLDRKVFLPSGGSLVIDRT
EAMTVIDVNTGKYTGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESN
RELVLRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSEPCECCKGRGLIMH
TEPVPEKPRSGGGAGEKVKAVASAAPAPAAAPAPAEPVGGASSRRRARKSAAPERTVVEV
VEAPADTDTDYHDTMGYDLSRYEADTAAAPAVADSQQGESARLAGADDPDALGDDEGDGD
GGDTGGGRRRSRRGGARRRTRP
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagaacgagcccgagggcggcgaacggaccggttcccagccggccggcgagacc
gctgaccgcaccaccgacaccggccgcgccagcggtgacaccgtcaccggcacggcggat
ctcaccgcgggcggccccaccgccgagggcgcggctccggccggcggccccaccgccgcg
cagggcgaggccgccggggccgccgccgccgaggcgccggccccgccgccccgcaagcgg
gccacccgtcggcgggccaccccgctcaaccagccggagcagaccgaggctccggtggag
gcgtccacctccgccggctcggccagcggcgaggccccccaggccgaggtcctcgccccg
gtcgccggtgagctggaggagatgccgaagacgccgcgtcgacgccggaaggcgaccacc
gcgaaggcggcggaggagccgatcgtcgtcgccgccgccgaggaggccggcgcggaggtc
gtacccccggtcaaggtgaccaggacccgccgccgcaaggccaccgcgcccccggtggag
gccccggcggccgagccggtcgcgggcgaggccgccgtggcgggcgaggggcccgccgag
cagccgacgccggcggtggccgagccggcggtggcccagcccccggtcgctgccgccgcc
gagcccgacgccggcgctgccggtggtgcgccggaccagccgccggccggcgcgaccgac
gccgaccagtcggccgcctccggtaagcccgcctccggccgggccaccgccgggcgcggc
cgccgccggtccagtggcgccgagaaccgttccggagaggtgccgcccggggtggccgtc
cccggcgtggccgagccgccgtccggggtcgcggagcccgccgaggccgtcgagcccgcc
gcggtggtcgcgccggccgaggtcgccagggccgccgagcccgtggcggccgacgagccc
gccgagccgaggacccgccggcggcgggccgccctctccgcgccgaccgtcctgttcatg
gccccgcagccggacgagctgccggtggcccgcgtcgtggtgccggccccggtggagccg
gaggcggtcgaggagcagcccgagccgtcccgccggcgtcgccgcgcccggcgcgaggcc
gagccggtcgagcaggccgaggtgccggaggtcgaggaggagccggccgccgaggcggag
gaggccgaggccgccgacgacgaggaggacgaggagaccgccgcccgtcggcgtcgccgc
cggggccgccggggccggggccggggcaagggcggcgcggacgaggccgacgacgaggac
gccgaggaggccgcccaggccgaggagcccgaggccgagggcgacgaggacgagggcgag
ggcgagaccgacgagggcggcgacgggctgacccgtcgccggcggcgacgtcgccgccgc
ggcgcgggggacaccgacgggggtgccgacgacggcgtgccgacggtcgtcaagatccgt
gagccgcgcaaggccgtcgacgaggtgcagggcgtctccggctcgacccggctggaggcc
aagcggcagcgccgccgggacggccgggagcagcgccggacccgcccgccgatcctgagc
gagtccgagttcctggcccgccgggaggcggtcgaccgggtgatggcggtccgccagcgc
ggtgaccgcacccagatcgccgtcctggaggacggcgtgctggtcgagcactacgtcacc
cgcaactcctccggcacgatggccggcaacgtctacctcggcaaggtgcagaacgtcctg
ccgagcatggaggcggccttcgtcgacatcgggcgcggccgcaacgccgtcctgtacgcg
ggcgaggtcaactgggacaccaccggcctggaggggcgggcccggtccatcgagcaggcc
ctgcgctccggcgactcggtgctggtgcaggtcaccaaggacccgatcgggcacaagggg
gcccggctgaccagccacatcgcgctctccggccggcacctggtctacgtgccgaacggc
aacgcctccggcatcagccgcaagctgcccgacaccgagcgcaagcggctgcgcgacgcg
ctcaagaagctggtcccggacggcgcgggcgtgatcgtccgcactgccgccgagggggcg
agcgaggacgagctggcccgcgacgtcaagcgcctccaggcccagtgggaggacatccag
gccaaggccgcctccggcggcgcgccggtgctgctctacgaggagccggacctggtcatc
cgggtcgtgcgggacctgttcaacgaggacttccgcgagctggtgatcgagggcgacgag
tcgtacgggatggtcgagtcgtacctctcgcacgtctccccggacctggtcgaccgggtg
cgccggcacgcgggcgcggccgacgtgttcgccacctaccggatcgacgagcagatcctc
aagggcctggaccggaaggtcttcctgccctccggcggctcgctggtgatcgaccgcacc
gaggcgatgaccgtcatcgacgtcaacaccggcaagtacaccggctccggcgggaacctg
gaggagacggtcacccggaacaacctggaggcggccgaggagatcgtccgccagctccgg
ttgcgcgacatcggcggcatcgtggtgatcgacttcatcgacatggtgctggagtcgaac
cgtgagctggtgctgcgccggctcacggagtgcctcggccgggaccgcacgaagcaccag
gtcaccgagatcacctcgctcggcctggtgcagatgacccgcaagcgcatcggcgcgggg
ctgctggaggcgttcagcgagccctgcgagtgctgcaagggccggggcctgatcatgcac
accgagccggtgccggagaagccgcgttcgggcggtggcgcgggggagaaggtcaaggcg
gtcgcctcggcggcccccgctcccgccgccgccccggctccggccgagccggtcggcggg
gcgtcgtcgcgacgccgggcgcgcaagagcgctgccccggagcgcacggtcgtcgaggtg
gtcgaggcccctgccgacaccgacaccgactaccacgacacgatgggctacgacctgtcc
cggtacgaggcggacaccgccgccgcgccggccgtggcggacagccagcagggcgagtcc
gcccggctggcgggcgccgacgacccggacgcgctcggcgacgacgagggcgacggcgac
ggcggcgacacgggcgggggccggcggcggtcccgccggggcggcgcccggcggcgtacc
cgcccctga
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