Mucisphaera calidilacus: Pan265_08300
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Entry
Pan265_08300 CDS
T07838
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mcad
Mucisphaera calidilacus
Pathway
mcad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pan265_08300 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcad03019
]
Pan265_08300 (rne)
03009 Ribosome biogenesis [BR:
mcad03009
]
Pan265_08300 (rne)
Enzymes [BR:
mcad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Pan265_08300 (rne)
Messenger RNA biogenesis [BR:
mcad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pan265_08300 (rne)
Ribosome biogenesis [BR:
mcad03009
]
Prokaryotic type
rRNA processing factors
Pan265_08300 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QDU70986
UniProt:
A0A518BVI8
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All DBs
Position
complement(1056642..1059083)
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AA seq
813 aa
AA seq
DB search
MLINDVAGEECRIAIVNDGRLEEFYQERVSADSHVGNIYLGKVTNVEPSIQAAFVDFGLE
RNGFLHVSDLHPMYFPGEAREAFERVGVKTPRRERPPIQECLRKGSKIIVQVLKEGIGTK
GPTLTSYPSIPGRYLVMMPHMKHAGVSRKVEDDDARREARQILKDLAPPEELGFIVRTAG
IGQTKTELKRDLAYLTRLWKSIEKRKKKIRSVGELYEESDLIIRTLRDIYTTAIEEIVVD
SARAAQRVADFLAVVNPRTKTRVFHYDDPIPLYHRHRIEEQIENISAREVPLKSGGSLVF
DQAEALVAIDVNSGKSRDAKDAESNAFNTNAEAVEEIARQLRLRDLGGVIVADLIDMNLA
KNRRTIESRFKALMKEDRARTRVGSISMFGTLELTRQRMRPSLRKSLYEDCPACNGSGQV
KSGESVVLHVMRELAYVLHRENIARVELTISPDVAFQLLNRRRRQLVDLEKRYGKEVLVR
VGGNAIDYVSITAIDDRGAQINMAAMNEALRKRMAQAPQLHEVIGRAAGIIEIEEEHEPQ
AEPETSAEQPAKEKGLSGSYLDIADDEEDDEGTGKKRRRRRRGGRRRRKSGDSDENEAGS
AEPAAEERPEAETSEGEPAAAEPPSDDEDAPKKKRRRRRRRKSGETADTADQQGDQTSSS
DDEREAEGEEAPAEPAPKPLSAREVAAMHARTARGVEPTETVLKEKVEDEAKPAEQAEAD
EEAPPKKKRTRRRSKKTPTKKAAEDQTVVDEAAQSDDTATDDTPAEDPPKKKKRTRRRSK
KTTTQKATDEAPADAEPTTTGYANTVLAGETES
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgatgtcgccggcgaagagtgccgcatcgccatcgtcaacgacggacgt
ctcgaagagttctatcaggagagggtgtctgccgactcgcacgtcggcaacatctacctc
ggcaaggtcaccaacgtcgagccctcgattcaggcggcgttcgttgacttcgggctcgag
cgcaacggcttcctgcacgtctccgacctgcacccgatgtacttcccgggcgaggcccgc
gaggccttcgagcgtgtcggcgtcaagacgccgcgacgcgagcgcccgcccatccaggaa
tgcctccgcaaggggtcgaagattatcgtgcaggtcctgaaggagggcatcggcaccaag
ggtccgacgctcaccagctacccctccatccccggccgttacctggtgatgatgccccac
atgaagcacgccggggtttcgcgcaaggtcgaggacgacgacgcgaggcgcgaggcacgc
cagatcctcaaggacctcgcgccgcccgaggaactcgggttcatcgtccggaccgccggc
atcggccagaccaagaccgagctcaagcgcgacctcgcctacctcacacggctctggaag
tcgatcgagaagcggaagaagaagatccggagcgtcggcgagttgtacgaagagtcggat
ctgatcatccgcacgctccgcgacatctacaccacggctatcgaagaaatcgttgtcgat
tctgcccgtgccgctcaacgcgtcgccgactttctcgccgtcgtcaacccgcgcacgaaa
acccgcgtgttccactacgacgacccgatacctctgtatcaccggcaccgtatcgaagag
cagatcgagaacatttctgcgcgtgaggttcccctgaagtcgggtggttcgctggtcttc
gaccaggcggaggccctcgtcgccatcgacgtgaactccggcaagagccgtgacgccaag
gacgccgagtccaacgccttcaacacgaacgccgaggccgtcgaggagatcgcgcgtcag
cttcgtctccgcgaccttggcggggtgattgtcgccgacctcatcgatatgaatctggcc
aagaaccggcgcaccatcgagtcgcggttcaaggctctgatgaaggaagaccgcgcacgc
acgcgtgtcggctccatcagcatgttcgggactctggagctgacccgccagcgcatgcgt
ccgtcgctgcgcaagtctctgtacgaggactgcccggcctgcaacggctcggggcaggtc
aagagcggcgagtcggtcgtgctccacgtcatgcgtgaactcgcctatgtgctccaccgc
gagaacatcgcgcgtgtcgagctcacgatcagtccggacgtcgccttccagctgctgaac
cgtcgtcggcgacagctcgtggatctcgagaaacggtacggcaaggaggtactcgtccgc
gtgggcggcaacgcgattgattacgtttcgatcaccgccatcgacgaccgcggcgcacag
atcaacatggccgccatgaacgaggccctccgcaagcgtatggcgcaggcgcctcagctc
cacgaggtcatcggacgtgctgcgggcatcatcgagatcgaggaagagcacgagcctcag
gccgaacccgaaacctctgcggagcagcccgccaaggagaagggcctctccggcagctac
ctcgatattgccgacgacgaggaggacgacgagggaaccggcaagaaacggcgccgaaga
aggcgaggcggccgacgccgacgcaagtcaggcgacagcgacgagaacgaggcgggttca
gccgagccagccgctgaggaacgaccggaagccgagacctcggagggcgagccggctgcc
gctgaaccgccgagcgatgacgaggatgcgcccaagaagaagcgtcgacgccgacgacga
cgcaagtcgggcgagaccgccgacaccgcggatcagcaaggcgatcagacctcctcgtcg
gatgacgagcgtgaggccgagggagaagaggctcccgccgagcccgcccccaagccgctg
agcgcccgcgaggtcgctgccatgcatgcgcgcacggcccgaggcgtcgagccgaccgaa
accgtcctcaaggagaaggtggaggacgaagcgaaacctgccgagcaggccgaggccgac
gaggaggcaccccccaagaagaagcgcactcgtcgccggtccaagaagacccccaccaag
aaagccgctgaggatcagaccgttgttgacgaagcggcgcaatccgacgacaccgccacc
gacgacacaccggccgaagaccctcccaagaagaaaaagcgtacgcgacggcggtccaag
aagacgacgacccagaaggcaacggacgaagcacccgctgacgccgagccgaccaccacg
ggctacgccaacaccgtcctcgccggggagaccgaatcgtga
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