Mytilus californianus (California mussel): 127698256
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Entry
127698256 CDS
T08804
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03020
RNA polymerase
mcaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
127698256
09124 Replication and repair
03420 Nucleotide excision repair
127698256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcaf03021
]
127698256
03400 DNA repair and recombination proteins [BR:
mcaf03400
]
127698256
Enzymes [BR:
mcaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
127698256
Transcription machinery [BR:
mcaf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
127698256
DNA repair and recombination proteins [BR:
mcaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
127698256
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
TerS_N
Motif
Other DBs
NCBI-GeneID:
127698256
NCBI-ProteinID:
XP_052057581
LinkDB
All DBs
Position
Unknown
AA seq
1943 aa
AA seq
DB search
MAYTGDSNAPLRDVKRVQFGILGPDEIRRMSVTEGGIKYSETMEGGRPKLGGLMDPRQGT
VDRTSRCQTCAGIMQECPGHFGHIELAKPVFHVGFLTKTIKMIRCVCFYCSKLLVDINHP
KVKDVIAKSKGFPRKRFAHVYDLCKTKKICEGGDEMDGKLGEDLQDEEKKHQHGGCGRFQ
PKIRRQGLDLTAEWKNINEETQEKKIVLTAERVHEILKRISDEECIVLGMDPKFARPDWM
VITVQPVPPLCVRPAVVMFGSARNQDDLTHKLSDIIKANNQLRRNEQNGAAAHIISEDTK
MLQYHVATFTDNELPGLPKATQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNMTFPELVTPFNIDKMHDLVQRGSNQYPGAKYIVRDNGERID
LRFHPKSSDLHLQIGYKVERHMQDNDFIVFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSV
TTPYNADFDGDEMNLHLPQSLETKAEISNLALVSKMIITPQSNRPVMGIVQDTLTAVRKM
TKRDVFLDRGQMMNLLMFLPSWDGHMPQPAILKPRPYWTGKQLITLVIPGRVNCIRTHST
HNDDEDRGPYKWISPGDTKVLIEDGVLISGILCKKTLGASSGSLLHVLFQELGFETAGYM
YGNIQTVVNNWLMYEANSIGIGDTIADPQTYVDIQDTIRKAKFDVIEVIEKAHNDDLEPS
PGNTLRQTFENQVNRILNGARDKTGSKAQQSLSDFNNFKSMVVAGSKGSKINISQVIACV
GQQNVEGKRIPFGFRYRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQIEQLCQLTYGEDGLDACHVEFQDLPT
VKPPERIFEKKFKLDPNDERLLRKSMSEETIKDLLGDAQALALLENEWEQLREDRETVRS
IFPRGDSKVVLPCNLHRLIWNAQKIFRINTHKPTDLHPAKIVEGVAELCKRLISVPGDDK
LSVQANANATILMKCLVRSTLCAKRVTEEFRLSAEAFEWLLGEIETRFQQSHVHPGEMVG
ALGAQSLGEPATQMTLNTFHHAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLTGQAA
RDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEWVNVYYEMPDFDVSRIS
PWLLRIELNRKRMTDKKLSMEHISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSGGDK
VDSEEEIVDKMEDDVFLRCIESNLLSDMSLQGLEAIGKVYMHLPTTDDKKRIFITDTGEF
KGVAEWILETDGTALMRVLSQRNVDPIRTTTNDIVEVFQTLGIEAVRKSIEKEMTHVISF
DGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGALARCSFEETVDILIEAAAHAEV
DPMMGVSEAIMVGQLAKIGTGAFDLLLDAEKCKLGMEIPTNIGVGIIGGSTGLFFGAPGS
PGASMSPQMTPWQTGATPGYGAWSPGVGSGMTPGAAGFSPSAASESGYSPGYSPAWSPQP
GSPGSPASPYIPSPAGALSPSYSPASPSYVPSSPAVTPQSPGYSPTSPSYSPTSPGYSPT
SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYSPSSPSYSPSSPKYSPTSPSYS
PTSPSYSPSSPQYSPSSPKYSPASPSYSPSSPKYTPTSPTYSPSSPNYSPTSPEYSPSSP
QYSPSSPKYSPASPSYSPSSPKYSPQSPTYSPSSPKYSPGSPTYSPTSPQYSPTSPTYTP
GTPKYSPTSPAYSAADDDDSDME
NT seq
5832 nt
NT seq
+upstream
nt +downstream
nt
atggcttatactggtgattccaacgcacctcttcgcgacgtgaagagagtacagtttggg
attttaggaccagatgaaatcaggaggatgtctgttacagaaggaggtataaaatactct
gaaacaatggagggtggtagaccaaagcttggtggattgatggatcccagacaaggaaca
gtagataggacttccagatgtcagacatgtgcagggatcatgcaggaatgccctggacat
tttggacacatagaattagccaaaccagtcttccatgttggctttctgacaaaaaccatc
aaaatgataagatgtgtgtgtttctactgttcaaagctgttggttgatatcaatcatcca
aaggttaaagatgttatagcaaaatctaaaggatttccaagaaaaagatttgcacatgtt
tatgatctttgtaaaactaagaagatctgtgaaggtggagatgagatggatggtaaactt
ggtgaagatcttcaggatgaagagaaaaagcatcagcatggtgggtgtggaagatttcaa
ccaaaaataagaagacaaggtttagatttaactgcagaatggaagaatataaatgaagaa
acacaggagaaaaagattgtattgactgcagaaagagttcatgagattttgaagcgcatc
tcagatgaggaatgcattgtacttggaatggatcccaagtttgccagacctgactggatg
gttattactgtacagccagttccaccactctgtgtcagaccagctgttgtcatgtttggc
tcagctagaaatcaggatgatttaactcataagttgtcagacattatcaaagcaaataat
cagttacgaagaaatgaacaaaatggtgcagctgcacacatcatttctgaagacactaaa
atgttacagtatcatgtggcaactttcacagataatgaacttcctggtttgccaaaggcc
acacagaaatcgggtagacctttaaagtctgttaaacagagattgaagggtaaagaagga
agagtaagaggaaacttgatgggtaaacgtgttgacttttcagctcgtactgtcattact
ccagatccaaacttgagaattgatcaagtaggagtgcccagatctatagcacagaacatg
acatttcctgagttagtcacaccgtttaatatagacaaaatgcatgatttagtgcagaga
ggatccaatcagtatcctggtgctaagtatattgtacgggataatggagagagaatagat
ttaagatttcatccaaaatccagtgatcttcatctacagataggatacaaggtggaaagg
catatgcaggataatgattttattgtgtttaatcgacaaccaacactacataagatgagt
atgatgtgtcacagagtcaaagttttaccatggtctacattcagattaaatctgagtgta
accacaccatacaatgcagattttgatggagatgaaatgaacttgcatcttccccagtct
ttagagacgaaagctgagatttctaacttggcccttgtatccaagatgataataacacca
cagtctaacagaccagttatgggtattgtacaggacacgttgactgctgtccgaaaaatg
accaaaagagatgtatttttagacaggggacaaatgatgaaccttttgatgtttttacca
agctgggatggtcacatgccacagccggctatactaaaacccagaccttattggacagga
aaacagctgattaccttagtcattccaggtcgtgtaaattgtataagaacccacagtact
cacaatgatgatgaagacagaggtccgtacaaatggatttcacctggtgatactaaggta
ttgatagaggatggtgttctgattagtggtattctatgtaagaagactttgggtgcctct
tctggatctctgcttcacgtgctattccaggagctgggatttgaaacagctggttatatg
tatggtaacattcaaactgttgtcaacaactggctgatgtacgaagctaatagtattggt
attggtgacaccattgctgatcctcaaacttacgttgatattcaggacactattagaaaa
gccaagtttgatgtgatagaggttattgaaaaagcccacaatgatgacttggagccttca
ccaggtaatacactgcgtcagacttttgagaatcaggtgaacagaatcttgaatggagct
agagacaagactggtagtaaagctcaacagtctttgtcagatttcaacaacttcaaatct
atggtagtggctggatctaaaggttccaagattaatatatctcaggttattgcctgtgtg
ggacaacagaacgtggaaggaaagcgaattccttttggtttccggtacagaactttgcca
catttcatcaaagacgattatggtccagaatctagaggatttgtagaaaactcctacctt
gccggactgacaccatcagaattttacttccacgccatgggaggacgtgaaggtctcatt
gatactgctgtaaaaactgcagaaactggctacattcaaaggcgattgatcaaagctatg
gagagtgtgatggtaaaatatgatggaactgtacgtaaccaaattgaacagttgtgtcag
ttaacatatggtgaggatggccttgatgcctgtcatgttgagtttcaagatctgcctaca
gttaaaccacctgagcgcatctttgagaaaaagttcaagctggatcctaatgatgaaagg
ctcttaaggaaatcaatgagtgaagagactattaaagatctgcttggagatgctcaggcc
ttagccttgttagaaaatgagtgggaacaattaagagaggacagggaaacagttcgttca
atcttccccagaggagatagtaaagtggtattaccttgcaatctacacagactaatatgg
aatgcccaaaaaatcttcaggattaatacacataaacctacagaccttcatccagctaaa
attgtagaaggtgttgctgagctgtgtaaaagattgatatcagtaccaggagacgataaa
ctcagtgttcaagctaatgctaatgctacaattctgatgaaatgtcttgtaagatcaaca
ctgtgtgcaaagagagtgacagaagaattcagactcagtgctgaagcatttgagtggctg
cttggtgaaattgaaacaagatttcaacagtctcatgtacatccaggtgaaatggttgga
gctctaggtgcccaatctctgggagaacctgctacacagatgacattgaacactttccat
catgctggtgtatcagctaaaaacgtaactcttggtgtacctagattgaaggagattatc
aatatatcaaagaaaccaaaaactccatcattgacagtatatcttacgggtcaagcagcc
agagatgctgagaaagctaaggatgtgttatgtaaattagaacatacaacacttagaaaa
gtgacagccaacacagctatatattatgatccagacccacagaacacagtaattgctgaa
gatcaagaatgggttaatgtttactatgaaatgcctgactttgatgtctcaaggatctca
ccctggttgctaaggattgaactgaacagaaagcgaatgactgacaaaaaattaagtatg
gaacatatttcagaaaagatcacagcaggatttggtgatgatcttaattgtatattcaat
gatgacaatgcagagaagttagtgcttaggatcaggattatgaattctggaggagacaaa
gtagattctgaagaagagattgttgacaaaatggaggatgatgtattcctaagatgtata
gagtcaaatctattgtcagatatgtctctacagggtttagaggctataggaaaggtatac
atgcatttaccaacaactgatgacaagaagagaattttcatcactgacacaggagagttt
aaaggagtggcagaatggatcttggaaactgatggtacagctctgatgagagttttgagt
cagcgtaatgtagatcctatcagaactacaactaacgatattgttgaggttttccagaca
ctaggcattgaagctgtgcgaaagtcaattgagaaagaaatgactcatgtcatttctttt
gatggttcttacgtaaattacagacatttggccttgttgtgtgacgtgatgacagctaaa
ggtcatttgatggctattactcgtcacggcattaacagacaggaaactggtgccctagcc
agatgttcttttgaagaaacagttgatattttgattgaagctgcagcccatgcagaagtt
gatcctatgatgggtgtatctgaagccattatggttggacagttagctaagattggcaca
ggtgcatttgatctgttgttagatgcagagaaatgtaaacttggaatggagatccctaca
aatattggtgtgggaataattggtggaagtactggtttgttttttggagcacctggaagt
cctggagccagcatgtcaccacagatgacaccatggcagactggagctactcccggctat
ggtgcatggtcaccaggtgttggaagtggaatgactccaggagctgctggattctcacca
tctgctgctagtgagagtggttacagtccaggatacagtccagcctggtctccacaacct
ggttctcctggttccccagccagtccatatataccaagtccagctggagcactatctcct
agttattctccagcctctccttcctacgtaccatcatcacctgcagtgacaccacagagt
ccaggatactcaccaacaagtccatcatattctccaacaagtcctggatattcaccaact
tctccaaattacagtccaacaagcccgtcatattcacctacaagtccttcatacagtcca
acttctccatcttattcaccaacatcaccatcttattctccaacgtcaccatcatacagt
ccaacaagtccatcatactcgccaacttcaccatcatactctccaacaagtccaagctac
agtccaacatcgccatcctacagtccaacaagtccatcatactcaccaacttctccatca
tacagtccaaccagtccttcatattcaccgacatcaccttcttactcgccaacaagtcca
agttacagtccaacgtcaccaagttacagtccaacatcaccaagttactcaccgacaagt
ccgagctactcgccaacttcgccatcatattctccaacaagtccaagctacagcccgaca
agcccatcttacagtccgacaagtccaagctacagtccaagtagtccaaattacagtcca
agcagtccgagttattcaccaagcagtccaaagtacagtcctacaagtccaagttattct
ccaacgagtccgtcatattctccaagttcaccacagtactctccatcatcaccgaaatat
tcaccagcaagtccatcatattctccaagcagtccaaagtacacacctacatcaccgact
tattcaccaagttcaccgaactacagtcctacatcaccagaatatagtccaagttcacca
cagtacagtccaagctcgccaaagtacagtcctgcttcaccatcttattcaccgtcaagt
ccaaaatacagtccacagagtccaacttattcgccatctagcccgaaatattcacctgga
agtccaacgtactctccaactagtcctcagtattcaccaacaagtccaacatacactcct
ggaacaccaaagtattcaccaacgagtccagcatactctgctgctgacgatgatgatagt
gatatggagtaa
DBGET
integrated database retrieval system
